Hb_001369_340

Information

Type -
Description -
Location Contig1369: 319981-320661
Sequence    

Annotation

kegg
ID tcc:TCM_014921
description Peroxisomal membrane protein 11B
nr
ID XP_007038379.1
description Peroxisomal membrane protein 11B [Theobroma cacao]
swissprot
ID Q7XU74
description Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2
trembl
ID A0A061FZB2
description Peroxisomal membrane protein 11B OS=Theobroma cacao GN=TCM_014921 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisomal membrane protein 11b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_340 0.0 - - Peroxisomal membrane protein 11B [Theobroma cacao]
2 Hb_003767_060 0.0570309188 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_000025_700 0.0607511572 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
4 Hb_004117_380 0.0620250895 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
5 Hb_004017_030 0.065795358 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
6 Hb_003209_150 0.0665914985 - - CLE9, putative [Ricinus communis]
7 Hb_007462_020 0.0804384387 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_000088_230 0.0817918782 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
9 Hb_002010_030 0.0882697309 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_004109_140 0.0889609722 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001159_050 0.0906745175 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
12 Hb_000460_040 0.091432535 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
13 Hb_000155_020 0.0929139001 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005433_020 0.0981125182 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
15 Hb_078954_030 0.1007794103 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006106_010 0.1011819704 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
17 Hb_001424_010 0.105666586 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000483_470 0.107158617 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_004346_050 0.1077379443 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
20 Hb_005329_010 0.1114400741 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_340 Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_001369_340--Hb_003767_060 Hb_000025_700 Hb_000025_700 Hb_001369_340--Hb_000025_700 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_004017_030 Hb_004017_030 Hb_001369_340--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_001369_340--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_001369_340--Hb_007462_020 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_003767_060--Hb_004017_030 Hb_003767_060--Hb_003209_150 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_078954_030 Hb_078954_030 Hb_000025_700--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_000025_700--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_000025_700--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_000025_700--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_000025_700--Hb_016371_010 Hb_004117_380--Hb_000025_700 Hb_004117_380--Hb_003209_150 Hb_004117_380--Hb_004017_030 Hb_005488_210 Hb_005488_210 Hb_004117_380--Hb_005488_210 Hb_005890_010 Hb_005890_010 Hb_004117_380--Hb_005890_010 Hb_004017_030--Hb_007462_020 Hb_000155_020 Hb_000155_020 Hb_004017_030--Hb_000155_020 Hb_010136_010 Hb_010136_010 Hb_004017_030--Hb_010136_010 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160 Hb_002307_120 Hb_002307_120 Hb_003209_150--Hb_002307_120 Hb_003654_020 Hb_003654_020 Hb_003209_150--Hb_003654_020 Hb_003209_150--Hb_004017_030 Hb_000460_040 Hb_000460_040 Hb_007462_020--Hb_000460_040 Hb_007462_020--Hb_000155_020 Hb_007462_020--Hb_000025_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.8549 52.195 16.5806 0 0.0486115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0840811 0 0 0.0807787 56.0159

CAGE analysis