Hb_001369_360

Information

Type -
Description -
Location Contig1369: 326904-332726
Sequence    

Annotation

kegg
ID rcu:RCOM_1500420
description hypothetical protein
nr
ID AIU51131.1
description embryo yellow protein, partial [Manihot esculenta]
swissprot
ID Q3UM29
description Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus GN=Cog7 PE=2 SV=1
trembl
ID A0A097PSW3
description Embryo yellow protein (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0005829
description embryo yellow partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10169: 326954-332732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_360 0.0 - - embryo yellow protein, partial [Manihot esculenta]
2 Hb_027445_020 0.0510249144 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
3 Hb_000976_100 0.0707058973 - - eukaryotic translation elongation factor, putative [Ricinus communis]
4 Hb_003097_140 0.0740790145 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
5 Hb_000237_040 0.079988682 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
6 Hb_103684_010 0.080181304 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
7 Hb_001821_150 0.0828713446 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
8 Hb_000649_060 0.0834367282 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
9 Hb_000237_050 0.0840887556 - - CP2 [Hevea brasiliensis]
10 Hb_003994_220 0.0842224639 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
11 Hb_000363_040 0.0851665381 - - Protein transport protein Sec24A, putative [Ricinus communis]
12 Hb_003086_170 0.0901690306 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
13 Hb_001703_050 0.0911424861 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_011819_020 0.0917443712 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
15 Hb_002902_130 0.0941187258 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_001587_030 0.0946395144 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
17 Hb_003038_040 0.094643338 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_002874_110 0.0950945706 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_004019_120 0.0954700292 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
20 Hb_002025_330 0.095537515 - - peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_360 Hb_001369_360 Hb_027445_020 Hb_027445_020 Hb_001369_360--Hb_027445_020 Hb_000976_100 Hb_000976_100 Hb_001369_360--Hb_000976_100 Hb_003097_140 Hb_003097_140 Hb_001369_360--Hb_003097_140 Hb_000237_040 Hb_000237_040 Hb_001369_360--Hb_000237_040 Hb_103684_010 Hb_103684_010 Hb_001369_360--Hb_103684_010 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150 Hb_027445_020--Hb_000237_040 Hb_027445_020--Hb_000976_100 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_027445_020--Hb_003097_140 Hb_000237_050 Hb_000237_050 Hb_027445_020--Hb_000237_050 Hb_000976_100--Hb_000237_040 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_103684_010--Hb_000237_050 Hb_003544_050 Hb_003544_050 Hb_103684_010--Hb_003544_050 Hb_019280_010 Hb_019280_010 Hb_103684_010--Hb_019280_010 Hb_103684_010--Hb_003097_140 Hb_012114_100 Hb_012114_100 Hb_103684_010--Hb_012114_100 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_000130_180 Hb_000130_180 Hb_001821_150--Hb_000130_180 Hb_002284_250 Hb_002284_250 Hb_001821_150--Hb_002284_250 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_001821_150--Hb_007982_030 Hb_003417_010 Hb_003417_010 Hb_001821_150--Hb_003417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50893 7.18414 5.64773 16.2243 8.48414 7.11439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44813 4.45483 7.43759 15.3584 11.7352

CAGE analysis