Hb_001369_420

Information

Type -
Description -
Location Contig1369: 358723-366535
Sequence    

Annotation

kegg
ID rcu:RCOM_1500380
description protein binding protein, putative
nr
ID XP_012090441.1
description PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
swissprot
ID Q8VYC8
description E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2 PE=1 SV=1
trembl
ID B9R9S4
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1500380 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10177: 358708-366418 , PASA_asmbl_10178: 358680-366418 , PASA_asmbl_10179: 359454-366133 , PASA_asmbl_10180: 358596-359264
cDNA
(Sanger)
(ID:Location)		 045_E06.ab1: 358598-359264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_420 0.0 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
2 Hb_000025_140 0.0653425259 - - las1-like family protein [Populus trichocarpa]
3 Hb_000676_110 0.0685616936 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
4 Hb_008695_180 0.0687229487 - - eukaryotic translation initiation factor [Hevea brasiliensis]
5 Hb_000051_070 0.0692097396 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
6 Hb_000358_150 0.0701995067 - - hypothetical protein VITISV_012309 [Vitis vinifera]
7 Hb_001493_030 0.0705976242 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
8 Hb_001252_080 0.0753583459 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
9 Hb_003090_080 0.0761260117 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
10 Hb_007059_010 0.0773236724 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
11 Hb_000152_380 0.0803705995 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_075481_030 0.0803759175 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
13 Hb_066182_010 0.0816639923 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_000933_090 0.0830383727 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
15 Hb_002367_130 0.0833283528 - - UNC-50 family protein isoform 1 [Theobroma cacao]
16 Hb_000023_220 0.0845984913 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
17 Hb_000085_160 0.0849476689 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
18 Hb_048937_040 0.0859906068 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
19 Hb_106371_010 0.0871137472 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_054865_100 0.0878284757 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_420 Hb_001369_420 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_002506_020 Hb_002506_020 Hb_000025_140--Hb_002506_020 Hb_048937_040 Hb_048937_040 Hb_000025_140--Hb_048937_040 Hb_007904_200 Hb_007904_200 Hb_000025_140--Hb_007904_200 Hb_006185_050 Hb_006185_050 Hb_000025_140--Hb_006185_050 Hb_000645_050 Hb_000645_050 Hb_000025_140--Hb_000645_050 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_000676_110--Hb_008695_180 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_000676_110--Hb_001493_030 Hb_002876_110 Hb_002876_110 Hb_008695_180--Hb_002876_110 Hb_002200_080 Hb_002200_080 Hb_008695_180--Hb_002200_080 Hb_089032_040 Hb_089032_040 Hb_008695_180--Hb_089032_040 Hb_008695_180--Hb_000051_070 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_000358_150--Hb_001252_080 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000358_150--Hb_000051_070 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9631 17.695 12.5921 23.4706 53.4336 38.2207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8733 30.3798 29.8983 22.6904 15.1706

CAGE analysis