Hb_001369_450

Information

Type -
Description -
Location Contig1369: 380250-385449
Sequence    

Annotation

kegg
ID rcu:RCOM_1500340
description trehalose-6-phosphate synthase, putative
nr
ID XP_002510945.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID O64896
description Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana GN=TPPA PE=1 SV=1
trembl
ID B9R9S0
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_1500340 PE=3 SV=1
Gene Ontology
ID GO:0004805
description trehalose-phosphate phosphatase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10183: 380148-383772 , PASA_asmbl_10184: 382774-383824 , PASA_asmbl_10185: 384026-385485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_450 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_012545_050 0.1425253845 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
3 Hb_002067_140 0.1462460565 - - -
4 Hb_001776_170 0.1567878915 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002759_240 0.1644004118 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
6 Hb_001511_140 0.1667401276 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
7 Hb_000979_250 0.169023749 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001894_170 0.1708143027 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
9 Hb_005914_070 0.1708878467 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_260 0.174200848 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
11 Hb_001488_370 0.17636494 - - Esterase PIR7B, putative [Ricinus communis]
12 Hb_000264_020 0.1781786563 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
13 Hb_000562_040 0.1782128335 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
14 Hb_000373_180 0.1798917226 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
15 Hb_009314_010 0.1812127366 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000784_030 0.1832135767 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
17 Hb_012053_050 0.1840154389 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
18 Hb_017434_050 0.1841978645 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
19 Hb_005000_160 0.1847694628 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
20 Hb_000260_310 0.1860148655 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_450 Hb_001369_450 Hb_012545_050 Hb_012545_050 Hb_001369_450--Hb_012545_050 Hb_002067_140 Hb_002067_140 Hb_001369_450--Hb_002067_140 Hb_001776_170 Hb_001776_170 Hb_001369_450--Hb_001776_170 Hb_002759_240 Hb_002759_240 Hb_001369_450--Hb_002759_240 Hb_001511_140 Hb_001511_140 Hb_001369_450--Hb_001511_140 Hb_000979_250 Hb_000979_250 Hb_001369_450--Hb_000979_250 Hb_001488_370 Hb_001488_370 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_001437_130 Hb_001437_130 Hb_012545_050--Hb_001437_130 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_002067_140--Hb_001776_170 Hb_001369_600 Hb_001369_600 Hb_002067_140--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_002067_140--Hb_012053_050 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110 Hb_001776_170--Hb_001369_600 Hb_001776_170--Hb_012053_050 Hb_001776_170--Hb_001511_140 Hb_001776_170--Hb_002759_240 Hb_001776_170--Hb_000979_250 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_000788_080 Hb_000788_080 Hb_001511_140--Hb_000788_080 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_008066_030 Hb_008066_030 Hb_000979_250--Hb_008066_030 Hb_000613_160 Hb_000613_160 Hb_000979_250--Hb_000613_160 Hb_003198_010 Hb_003198_010 Hb_000979_250--Hb_003198_010 Hb_000979_250--Hb_001488_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6241 23.9151 8.04964 8.63803 4.40665 5.72545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.9502 116.138 134.364 19.0864 1.42466

CAGE analysis