Hb_001369_470

Information

Type -
Description -
Location Contig1369: 396457-400816
Sequence    

Annotation

kegg
ID rcu:RCOM_1500220
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_012090430.1
description PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
swissprot
ID Q8VXX5
description Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1
trembl
ID A0A067JF04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26248 PE=4 SV=1
Gene Ontology
ID GO:0005507
description monocopper oxidase-like protein sks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10188: 396364-396495 , PASA_asmbl_10189: 396504-397799 , PASA_asmbl_10190: 397959-400449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_470 0.0 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
2 Hb_005144_210 0.0884725534 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004108_210 0.1200574394 - - phenazine biosynthesis protein, putative [Ricinus communis]
4 Hb_000098_150 0.1310147851 - - DNA helicase hus2, putative [Ricinus communis]
5 Hb_001221_580 0.1358867324 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
6 Hb_161568_010 0.1377556056 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_005903_020 0.1383731597 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
8 Hb_000883_170 0.1390535257 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_143813_020 0.1400794395 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
10 Hb_001863_160 0.140223287 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
11 Hb_000703_160 0.1405035357 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
12 Hb_129204_020 0.1432494129 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
13 Hb_005901_030 0.147618192 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
14 Hb_000617_310 0.1477921858 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
15 Hb_039021_010 0.1483640591 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
16 Hb_156635_020 0.1504780187 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
17 Hb_000296_010 0.1530395508 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_000940_050 0.1536503323 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
19 Hb_000035_080 0.1558799808 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
20 Hb_000890_160 0.1585536452 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_470 Hb_001369_470 Hb_005144_210 Hb_005144_210 Hb_001369_470--Hb_005144_210 Hb_004108_210 Hb_004108_210 Hb_001369_470--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_001369_470--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_001369_470--Hb_001221_580 Hb_161568_010 Hb_161568_010 Hb_001369_470--Hb_161568_010 Hb_005903_020 Hb_005903_020 Hb_001369_470--Hb_005903_020 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_005144_210--Hb_000098_150 Hb_004108_210--Hb_000098_150 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_004108_210--Hb_005903_020 Hb_004108_210--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_000098_150--Hb_014231_020 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_000567_090 Hb_000567_090 Hb_001221_580--Hb_000567_090 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_001221_580--Hb_005903_020 Hb_004096_160 Hb_004096_160 Hb_161568_010--Hb_004096_160 Hb_004228_120 Hb_004228_120 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_000958_080 Hb_000958_080 Hb_161568_010--Hb_000958_080 Hb_161568_010--Hb_000703_160 Hb_000497_190 Hb_000497_190 Hb_161568_010--Hb_000497_190 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1818 2.82066 8.25256 4.46629 2.22726 0.803154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15787 1.28288 1.51433 3.38915 0.745629

CAGE analysis