Hb_001369_570

Information

Type -
Description -
Location Contig1369: 450289-451860
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14630g
description POPTRDRAFT_575675; hypothetical protein
nr
ID KDP22405.1
description hypothetical protein JCGZ_26236 [Jatropha curcas]
swissprot
ID Q9SB36
description Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1
trembl
ID A0A067JQW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26236 PE=4 SV=1
Gene Ontology
ID GO:0004127
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10201: 450012-452335
cDNA
(Sanger)
(ID:Location)		 048_J14.ab1: 451544-452335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_570 0.0 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
2 Hb_002572_050 0.1180488646 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_000953_050 0.1187952091 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
4 Hb_028207_040 0.1198966381 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
5 Hb_005496_180 0.1235974687 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
6 Hb_001794_060 0.1305567631 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001525_010 0.1421040776 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
8 Hb_000483_040 0.1422527663 - - Cell division protein ftsH, putative [Ricinus communis]
9 Hb_008511_100 0.1428579395 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
10 Hb_126380_010 0.1500087081 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
11 Hb_003078_050 0.1508385305 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
12 Hb_000634_070 0.1510211332 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
13 Hb_010921_030 0.1573113734 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
14 Hb_001205_030 0.1576591451 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
15 Hb_003494_060 0.1579294005 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
16 Hb_003055_140 0.1610551796 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
17 Hb_000062_080 0.1643154774 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
18 Hb_000976_290 0.1657868023 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
19 Hb_000179_230 0.1664842549 - - PREDICTED: myosin-17 [Jatropha curcas]
20 Hb_002097_200 0.1674413767 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_570 Hb_001369_570 Hb_002572_050 Hb_002572_050 Hb_001369_570--Hb_002572_050 Hb_000953_050 Hb_000953_050 Hb_001369_570--Hb_000953_050 Hb_028207_040 Hb_028207_040 Hb_001369_570--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_001369_570--Hb_005496_180 Hb_001794_060 Hb_001794_060 Hb_001369_570--Hb_001794_060 Hb_001525_010 Hb_001525_010 Hb_001369_570--Hb_001525_010 Hb_002572_050--Hb_000953_050 Hb_002572_050--Hb_005496_180 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_000953_050--Hb_028207_040 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_028207_040--Hb_001525_010 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_126380_010 Hb_126380_010 Hb_001794_060--Hb_126380_010 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_001433_140 Hb_001433_140 Hb_001794_060--Hb_001433_140 Hb_003506_070 Hb_003506_070 Hb_001525_010--Hb_003506_070 Hb_003125_030 Hb_003125_030 Hb_001525_010--Hb_003125_030 Hb_001525_010--Hb_000953_050 Hb_000540_110 Hb_000540_110 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55814 15.3988 1.26483 2.18789 1.71069 2.4615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77562 3.32943 3.50559 2.20119 2.78169

CAGE analysis