Hb_001369_590

Information

Type transcription factor
Description TF Family: MYB
Location Contig1369: 468950-470199
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14600g
description POPTRDRAFT_824864; hypothetical protein
nr
ID XP_002321838.2
description hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID B9ICU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14600g PE=4 SV=2
Gene Ontology
ID GO:0005488
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10202: 468963-470052 , PASA_asmbl_10203: 470063-470189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_590 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
2 Hb_005365_040 0.0477412907 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
3 Hb_002121_030 0.0692741247 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
4 Hb_002499_050 0.0751668284 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_006620_030 0.0768717709 - - nitrate reductase, putative [Ricinus communis]
6 Hb_000152_650 0.0795007054 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_000084_210 0.0806019609 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
8 Hb_000160_260 0.0824856119 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_105148_020 0.0856566052 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
10 Hb_054615_010 0.0857254213 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
11 Hb_000051_150 0.0866531924 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
12 Hb_001671_070 0.0916161359 - - kinase, putative [Ricinus communis]
13 Hb_004003_020 0.0972681157 - - unnamed protein product [Coffea canephora]
14 Hb_000431_080 0.0982774796 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
15 Hb_104014_010 0.0992127958 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_000735_190 0.1026688652 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
17 Hb_089736_010 0.1032278249 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
18 Hb_062773_010 0.1035525508 - - beta glucosidase [Manihot esculenta]
19 Hb_001166_010 0.1061413993 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_074240_030 0.1061800827 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001369_590 Hb_001369_590 Hb_005365_040 Hb_005365_040 Hb_001369_590--Hb_005365_040 Hb_002121_030 Hb_002121_030 Hb_001369_590--Hb_002121_030 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_000152_650 Hb_000152_650 Hb_001369_590--Hb_000152_650 Hb_000084_210 Hb_000084_210 Hb_001369_590--Hb_000084_210 Hb_000051_150 Hb_000051_150 Hb_005365_040--Hb_000051_150 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_005365_040--Hb_002121_030 Hb_005365_040--Hb_000084_210 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_002499_050--Hb_000084_210 Hb_002499_050--Hb_006620_030 Hb_000282_020 Hb_000282_020 Hb_002499_050--Hb_000282_020 Hb_002499_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_002499_050--Hb_048141_050 Hb_006501_080 Hb_006501_080 Hb_006620_030--Hb_006501_080 Hb_105148_020 Hb_105148_020 Hb_006620_030--Hb_105148_020 Hb_004308_030 Hb_004308_030 Hb_006620_030--Hb_004308_030 Hb_129956_010 Hb_129956_010 Hb_006620_030--Hb_129956_010 Hb_000264_160 Hb_000264_160 Hb_000152_650--Hb_000264_160 Hb_000152_650--Hb_054615_010 Hb_104014_010 Hb_104014_010 Hb_000152_650--Hb_104014_010 Hb_000152_650--Hb_005365_040 Hb_002561_040 Hb_002561_040 Hb_000084_210--Hb_002561_040 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.52061 167.322 36.8168 0.0748958 0.0412378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.584876 49.6569

CAGE analysis