Hb_001369_620

Information

Type -
Description -
Location Contig1369: 491033-492058
Sequence    

Annotation

kegg
ID tcc:TCM_014962
description EXORDIUM like 3
nr
ID XP_012090412.1
description PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
swissprot
ID Q9FHM9
description Protein EXORDIUM-like 3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1
trembl
ID A0A067JHX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26229 PE=4 SV=1
Gene Ontology
ID GO:0009505
description protein exordium-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_620 0.0 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
2 Hb_000003_510 0.1001369413 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
3 Hb_001053_110 0.1065569296 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
4 Hb_002016_020 0.1155092441 - - RALFL33, putative [Ricinus communis]
5 Hb_003734_120 0.1204438297 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
6 Hb_003805_080 0.1209921042 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
7 Hb_001963_020 0.1229133717 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_002042_200 0.1273463802 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_000417_350 0.1273589053 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001623_400 0.1276845194 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000041_290 0.1292530847 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_135811_040 0.1293322585 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000300_170 0.1294744333 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
14 Hb_118707_020 0.1312440266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_129637_010 0.1313083772 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
16 Hb_005489_120 0.1323214617 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
17 Hb_001470_040 0.1340952659 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
18 Hb_000032_560 0.1342857605 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
19 Hb_000276_030 0.1352905171 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_001959_030 0.1353698297 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001369_620 Hb_001369_620 Hb_000003_510 Hb_000003_510 Hb_001369_620--Hb_000003_510 Hb_001053_110 Hb_001053_110 Hb_001369_620--Hb_001053_110 Hb_002016_020 Hb_002016_020 Hb_001369_620--Hb_002016_020 Hb_003734_120 Hb_003734_120 Hb_001369_620--Hb_003734_120 Hb_003805_080 Hb_003805_080 Hb_001369_620--Hb_003805_080 Hb_001963_020 Hb_001963_020 Hb_001369_620--Hb_001963_020 Hb_000003_510--Hb_001963_020 Hb_000276_030 Hb_000276_030 Hb_000003_510--Hb_000276_030 Hb_001470_040 Hb_001470_040 Hb_000003_510--Hb_001470_040 Hb_002072_020 Hb_002072_020 Hb_000003_510--Hb_002072_020 Hb_010174_170 Hb_010174_170 Hb_000003_510--Hb_010174_170 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000300_170 Hb_000300_170 Hb_001053_110--Hb_000300_170 Hb_005489_120 Hb_005489_120 Hb_001053_110--Hb_005489_120 Hb_000417_350 Hb_000417_350 Hb_001053_110--Hb_000417_350 Hb_005333_120 Hb_005333_120 Hb_001053_110--Hb_005333_120 Hb_135811_040 Hb_135811_040 Hb_002016_020--Hb_135811_040 Hb_000032_560 Hb_000032_560 Hb_002016_020--Hb_000032_560 Hb_001959_030 Hb_001959_030 Hb_002016_020--Hb_001959_030 Hb_002597_010 Hb_002597_010 Hb_002016_020--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_002016_020--Hb_000580_070 Hb_003734_120--Hb_000276_030 Hb_003787_060 Hb_003787_060 Hb_003734_120--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003734_120--Hb_188923_010 Hb_018133_110 Hb_018133_110 Hb_003734_120--Hb_018133_110 Hb_007313_010 Hb_007313_010 Hb_003734_120--Hb_007313_010 Hb_002042_200 Hb_002042_200 Hb_003734_120--Hb_002042_200 Hb_003805_080--Hb_003787_060 Hb_028008_030 Hb_028008_030 Hb_003805_080--Hb_028008_030 Hb_039496_010 Hb_039496_010 Hb_003805_080--Hb_039496_010 Hb_003805_080--Hb_188923_010 Hb_000230_160 Hb_000230_160 Hb_003805_080--Hb_000230_160 Hb_003058_180 Hb_003058_180 Hb_003805_080--Hb_003058_180 Hb_001963_020--Hb_001470_040 Hb_001963_020--Hb_000276_030 Hb_001963_020--Hb_001053_110 Hb_001963_020--Hb_010174_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38825 16.4707 10.9849 37.9993 0.733338 1.36312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14726 0 0 67.8063 3.40235

CAGE analysis