Hb_001369_640

Information

Type -
Description -
Location Contig1369: 504995-506562
Sequence    

Annotation

kegg
ID rcu:RCOM_1499710
description 40S ribosomal protein S20, putative
nr
ID XP_012090410.1
description PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
swissprot
ID P49200
description 40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2
trembl
ID A0A067JES0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26227 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s20-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10215: 504695-506548
cDNA
(Sanger)
(ID:Location)		 012_C18.ab1: 504695-506505 , 014_J11.ab1: 504695-506511 , 020_I17.ab1: 504699-506548 , 022_K09.ab1: 504752-506514 , 023_L07.ab1: 504695-506511 , 025_N23.ab1: 504699-506519 , 032_F10.ab1: 504697-506511 , 037_M22.ab1: 504695-506513 , 044_K22.ab1: 505366-506517 , 045_F05.ab1: 504695-506513 , 046_C06.ab1: 504752-506514 , 048_E20.ab1: 504695-506493 , 050_O02.ab1: 505366-506516 , 053_B18.ab1: 504695-506511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_640 0.0 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
2 Hb_000152_420 0.0650989776 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
3 Hb_000690_180 0.0685499425 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
4 Hb_003943_130 0.0710885896 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
5 Hb_001314_100 0.0713792138 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
6 Hb_002289_120 0.0744497605 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
7 Hb_134949_020 0.0777444209 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
8 Hb_012368_020 0.0847900441 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
9 Hb_168054_010 0.0857334739 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
10 Hb_009051_030 0.0859726447 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
11 Hb_001538_090 0.087825601 - - 40S ribosomal protein S29 [Morus notabilis]
12 Hb_000635_180 0.0886064984 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_000102_020 0.0888398859 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
14 Hb_165132_010 0.0895038973 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
15 Hb_000307_090 0.0913586707 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
16 Hb_001214_160 0.0917087216 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_009793_010 0.092148856 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
18 Hb_000926_300 0.0925896169 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_000007_100 0.0936201531 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
20 Hb_012573_070 0.0943530319 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001369_640 Hb_001369_640 Hb_000152_420 Hb_000152_420 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_002289_120 Hb_002289_120 Hb_001369_640--Hb_002289_120 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_000792_130 Hb_000792_130 Hb_000152_420--Hb_000792_130 Hb_009793_010 Hb_009793_010 Hb_000152_420--Hb_009793_010 Hb_000152_420--Hb_002289_120 Hb_004157_030 Hb_004157_030 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_004032_010 Hb_004032_010 Hb_000690_180--Hb_004032_010 Hb_002226_070 Hb_002226_070 Hb_000690_180--Hb_002226_070 Hb_005045_060 Hb_005045_060 Hb_000690_180--Hb_005045_060 Hb_003929_250 Hb_003929_250 Hb_000690_180--Hb_003929_250 Hb_000056_200 Hb_000056_200 Hb_000690_180--Hb_000056_200 Hb_003943_130--Hb_002289_120 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_001314_100--Hb_134949_020 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_003878_010 Hb_003878_010 Hb_002289_120--Hb_003878_010 Hb_134949_020--Hb_165132_010 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_033594_110 Hb_033594_110 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_134949_020--Hb_002864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
206.788 158.57 168.934 227.346 192.708 343.006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
413.387 629.833 276.584 119.274 62.439

CAGE analysis