Hb_001369_650

Information

Type -
Description -
Location Contig1369: 508226-510582
Sequence    

Annotation

kegg
ID rcu:RCOM_1499680
description Methylosome subunit pICln, putative
nr
ID XP_012090409.1
description PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
swissprot
ID Q9LVA7
description Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana GN=At5g62290 PE=2 SV=1
trembl
ID A0A067JQV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26226 PE=4 SV=1
Gene Ontology
ID GO:0005829
description chloride conductance regulatory protein icln

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10217: 508226-510581
cDNA
(Sanger)
(ID:Location)		 003_D21.ab1: 508433-510581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_650 0.0 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
2 Hb_000392_270 0.0635900919 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
3 Hb_000045_130 0.065807038 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
4 Hb_011360_140 0.0670300375 - - 40S ribosomal protein S19, putative [Ricinus communis]
5 Hb_003001_060 0.0671089948 - - wound-responsive family protein [Populus trichocarpa]
6 Hb_000977_080 0.068837506 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_009767_120 0.069317054 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
8 Hb_011805_080 0.0776407956 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
9 Hb_003551_020 0.078313287 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
10 Hb_000260_050 0.078682909 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
11 Hb_003878_190 0.079274044 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
12 Hb_001828_090 0.0796490337 - - prohibitin, putative [Ricinus communis]
13 Hb_001623_330 0.0806215549 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
14 Hb_007747_090 0.081130052 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
15 Hb_000019_230 0.0816224681 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_000933_180 0.0832262644 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
17 Hb_005535_050 0.0844484132 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
18 Hb_000473_040 0.0846003247 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
19 Hb_000270_840 0.0870011655 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
20 Hb_002893_060 0.0870118179 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_650 Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_000392_270--Hb_000977_080 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_000392_270--Hb_011360_140 Hb_000045_130--Hb_000977_080 Hb_000045_130--Hb_003551_020 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_000977_080--Hb_003551_020 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_000019_230 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.1738 21.7653 19.7429 10.5043 61.8561 69.8254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.367 87.8585 31.8608 19.8162 7.67454

CAGE analysis