Hb_001369_660

Information

Type -
Description -
Location Contig1369: 513570-517060
Sequence    

Annotation

kegg
ID tcc:TCM_005525
description Ribosomal protein S13A
nr
ID KJB09907.1
description hypothetical protein B456_001G174200, partial [Gossypium raimondii]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID A0A0D2LZT7
description Gossypium raimondii chromosome 1, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_001G174200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10218: 513089-516728
cDNA
(Sanger)
(ID:Location)		 002_M17.ab1: 513615-516730 , 009_C04.ab1: 513808-516730 , 009_J10.ab1: 513661-516728 , 035_D13.ab1: 513648-516727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_660 0.0 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
2 Hb_004440_050 0.0537847214 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
3 Hb_000163_160 0.0614313094 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
4 Hb_168054_010 0.0693938324 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
5 Hb_010180_020 0.0726354466 - - hypothetical protein glysoja_030394 [Glycine soja]
6 Hb_001604_080 0.0777092307 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
7 Hb_003687_110 0.081768831 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
8 Hb_000457_110 0.0844119947 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
9 Hb_012008_020 0.0847700603 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
10 Hb_000349_060 0.0849034673 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_002411_170 0.0855935864 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
12 Hb_000780_060 0.0863087342 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
13 Hb_000815_040 0.0870201231 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
14 Hb_002868_010 0.0872877735 - - 60S ribosomal protein L30, putative [Ricinus communis]
15 Hb_027295_010 0.0884508915 - - 40S ribosomal protein S7, putative [Ricinus communis]
16 Hb_009557_070 0.0890323611 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003939_080 0.0897643322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001358_030 0.0903457193 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_004944_010 0.0904365717 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
20 Hb_007229_070 0.0907746308 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_660 Hb_001369_660 Hb_004440_050 Hb_004440_050 Hb_001369_660--Hb_004440_050 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_010180_020 Hb_010180_020 Hb_001369_660--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_004440_050--Hb_010180_020 Hb_010407_040 Hb_010407_040 Hb_000163_160--Hb_010407_040 Hb_000494_020 Hb_000494_020 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000000_160 Hb_000000_160 Hb_000163_160--Hb_000000_160 Hb_168054_010--Hb_010180_020 Hb_001314_100 Hb_001314_100 Hb_168054_010--Hb_001314_100 Hb_168054_010--Hb_001604_080 Hb_168054_010--Hb_003687_110 Hb_165132_010 Hb_165132_010 Hb_168054_010--Hb_165132_010 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_003687_110--Hb_165132_010 Hb_003687_110--Hb_010180_020 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_003687_110--Hb_002411_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
240.996 123.697 147.954 156.468 194.796 414.187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
297.946 446.455 173.166 109.105 58.8651

CAGE analysis