Hb_001369_690

Information

Type -
Description -
Location Contig1369: 542965-546207
Sequence    

Annotation

kegg
ID cit:102620775
description hypersensitive-induced response protein 4-like
nr
ID XP_012090404.1
description PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
swissprot
ID Q9FHM7
description Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1
trembl
ID A0A067JER7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26222 PE=4 SV=1
Gene Ontology
ID GO:0005774
description hypersensitive-induced response protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10220: 543041-546195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_690 0.0 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
2 Hb_004218_110 0.0592381379 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
3 Hb_003125_010 0.060057706 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
4 Hb_000331_450 0.0681577569 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
5 Hb_015934_070 0.0683951541 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
6 Hb_012053_070 0.0695213039 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
7 Hb_025240_040 0.0700547897 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
8 Hb_004254_120 0.0721586821 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003918_010 0.0739505877 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
10 Hb_002759_060 0.0741137423 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
11 Hb_015807_040 0.0757382674 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
12 Hb_000477_060 0.0763471515 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_002893_080 0.0764326616 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
14 Hb_002473_130 0.0774340818 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
15 Hb_001833_110 0.0805937077 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001828_190 0.0809338638 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
17 Hb_001789_070 0.0811594674 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
18 Hb_000656_110 0.0812788602 - - nucleolysin tia-1, putative [Ricinus communis]
19 Hb_032202_190 0.0816002661 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
20 Hb_002061_040 0.0822183861 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001369_690 Hb_001369_690 Hb_004218_110 Hb_004218_110 Hb_001369_690--Hb_004218_110 Hb_003125_010 Hb_003125_010 Hb_001369_690--Hb_003125_010 Hb_000331_450 Hb_000331_450 Hb_001369_690--Hb_000331_450 Hb_015934_070 Hb_015934_070 Hb_001369_690--Hb_015934_070 Hb_012053_070 Hb_012053_070 Hb_001369_690--Hb_012053_070 Hb_025240_040 Hb_025240_040 Hb_001369_690--Hb_025240_040 Hb_002759_060 Hb_002759_060 Hb_004218_110--Hb_002759_060 Hb_004218_110--Hb_025240_040 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_003125_010--Hb_025240_040 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_000331_450--Hb_012053_070 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_000331_450--Hb_003125_010 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_127552_030 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7262 9.33726 10.2501 19.3392 19.5886 24.9296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4071 29.5216 28.0015 21.3719 14.1377

CAGE analysis