Hb_001369_730

Information

Type -
Description -
Location Contig1369: 575868-582549
Sequence    

Annotation

kegg
ID tcc:TCM_014982
description F5O11.10, putative isoform 1
nr
ID XP_007038452.1
description F5O11.10, putative isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G0M8
description F5O11.10, putative isoform 1 OS=Theobroma cacao GN=TCM_014982 PE=4 SV=1
Gene Ontology
ID GO:0003676
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10224: 576429-577709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_730 0.0 - - F5O11.10, putative isoform 1 [Theobroma cacao]
2 Hb_167498_010 0.0435247138 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
3 Hb_000329_470 0.059073423 - - ccr4-not transcription complex, putative [Ricinus communis]
4 Hb_001409_020 0.0647938449 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
5 Hb_001198_100 0.0657672962 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
6 Hb_000732_010 0.0677840837 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
7 Hb_004800_080 0.0701150781 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
8 Hb_003158_010 0.0701424555 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
9 Hb_008554_130 0.0704311883 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
10 Hb_005116_160 0.0711416965 transcription factor TF Family: TRAF -
11 Hb_006649_050 0.07181934 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_009767_110 0.0733186357 - - -
13 Hb_001114_140 0.0737215171 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
14 Hb_001004_060 0.0737278264 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
15 Hb_007416_180 0.0747151819 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_002518_260 0.0747797147 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
17 Hb_002107_030 0.0750625864 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
18 Hb_002078_130 0.0750683576 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_005779_080 0.075271836 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_005054_230 0.0754759619 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_730 Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_001369_730--Hb_167498_010 Hb_000329_470 Hb_000329_470 Hb_001369_730--Hb_000329_470 Hb_001409_020 Hb_001409_020 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_003158_010 Hb_003158_010 Hb_167498_010--Hb_003158_010 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000329_470 Hb_000225_040 Hb_000225_040 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_000225_040 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_002232_410 Hb_002232_410 Hb_000732_010--Hb_002232_410 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_002205_110 Hb_002205_110 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240 Hb_008554_130 Hb_008554_130 Hb_004800_080--Hb_008554_130 Hb_004800_080--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_004800_080--Hb_120327_010 Hb_002391_310 Hb_002391_310 Hb_004800_080--Hb_002391_310 Hb_004800_080--Hb_007254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78053 3.88424 1.71992 2.76622 3.68726 3.44275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.22487 3.47439 3.71577 2.85098 3.44787

CAGE analysis