Hb_001369_750

Information

Type -
Description -
Location Contig1369: 607074-607979
Sequence    

Annotation

kegg
ID rcu:RCOM_0758650
description rRNA-processing protein EBP2, putative (EC:1.3.1.74)
nr
ID XP_012085961.1
description PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
swissprot
ID Q9LUJ5
description Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1
trembl
ID B9SKC1
description rRNA-processing protein EBP2, putative OS=Ricinus communis GN=RCOM_0758650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable rrna-processing protein ebp2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_750 0.0 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
2 Hb_000479_250 0.0659561018 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
3 Hb_000261_060 0.0711771564 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
4 Hb_002276_020 0.0775751249 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
5 Hb_001366_180 0.0786822753 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_006274_030 0.0811741391 - - F-box and wd40 domain protein, putative [Ricinus communis]
7 Hb_002496_020 0.0859825888 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000665_130 0.0867921852 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
9 Hb_005253_030 0.0881602694 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004531_140 0.0884887799 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
11 Hb_005686_090 0.0903113145 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
12 Hb_005144_050 0.0918289809 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
13 Hb_001014_160 0.0919451201 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
14 Hb_005463_110 0.0948548157 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
15 Hb_001314_080 0.0956496777 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
16 Hb_036790_080 0.0959893814 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
17 Hb_015941_020 0.0963104448 - - -
18 Hb_002811_130 0.0968192125 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
19 Hb_001008_120 0.0972702285 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
20 Hb_000521_250 0.097661641 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_750 Hb_001369_750 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_000261_060 Hb_000261_060 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_000479_250--Hb_006274_030 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_036790_080 Hb_036790_080 Hb_000261_060--Hb_036790_080 Hb_005253_030 Hb_005253_030 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_000665_130 Hb_000665_130 Hb_002276_020--Hb_000665_130 Hb_011316_090 Hb_011316_090 Hb_002276_020--Hb_011316_090 Hb_001951_180 Hb_001951_180 Hb_002276_020--Hb_001951_180 Hb_002276_020--Hb_000261_060 Hb_010883_040 Hb_010883_040 Hb_002276_020--Hb_010883_040 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006274_030--Hb_006478_020 Hb_006274_030--Hb_002014_030 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63506 2.04654 1.761 3.53247 2.78989 3.49727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73071 3.20472 2.64006 2.42042 5.86487

CAGE analysis