Hb_001369_770

Information

Type -
Description -
Location Contig1369: 615115-619355
Sequence    

Annotation

kegg
ID cit:102622810
description uncharacterized LOC102622810
nr
ID XP_012090392.1
description PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
swissprot
ID Q9SB31
description AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana GN=AHL3 PE=1 SV=1
trembl
ID A0A067JQV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26216 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at hook motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10227: 615080-618934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_770 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
2 Hb_002942_110 0.0953222944 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
3 Hb_000538_190 0.1013800714 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
4 Hb_000599_130 0.1016876136 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
5 Hb_020178_050 0.1030472491 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
6 Hb_004195_120 0.1105522406 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_005203_020 0.1110056464 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
8 Hb_001231_080 0.1149763701 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
9 Hb_000120_520 0.1180626271 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
10 Hb_004310_040 0.1186860727 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000123_350 0.1255012491 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_000836_370 0.1262577702 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
13 Hb_002016_060 0.127264086 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
14 Hb_005649_090 0.1295960405 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
15 Hb_000362_090 0.1297658721 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
16 Hb_003226_110 0.1318673322 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
17 Hb_000175_350 0.1327510117 - - phopholipase d alpha, putative [Ricinus communis]
18 Hb_001699_150 0.1331539048 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
19 Hb_001865_060 0.1336371239 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
20 Hb_009897_010 0.1343335597 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_770 Hb_001369_770 Hb_002942_110 Hb_002942_110 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_002942_110--Hb_004195_120 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_000538_190--Hb_020178_050 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_000175_350 Hb_000175_350 Hb_000599_130--Hb_000175_350 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000120_420 Hb_000120_420 Hb_000599_130--Hb_000120_420 Hb_000448_060 Hb_000448_060 Hb_020178_050--Hb_000448_060 Hb_020178_050--Hb_004324_060 Hb_020178_050--Hb_004195_120 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0956 23.3531 7.21287 5.98979 5.90477 8.62351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47967 1.39286 1.13853 8.52314 3.28023

CAGE analysis