Hb_001369_790

Information

Type -
Description -
Location Contig1369: 625838-629960
Sequence    

Annotation

kegg
ID rcu:RCOM_1498850
description ATP-dependent clp protease, putative
nr
ID XP_012090389.1
description PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
swissprot
ID Q8GW78
description Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1
trembl
ID A0A067JHW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26214 PE=4 SV=1
Gene Ontology
ID GO:0009570
description clp protease-related protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10231: 626013-629791 , PASA_asmbl_10232: 628912-629231 , PASA_asmbl_10233: 626014-626699 , PASA_asmbl_10235: 627851-628062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_790 0.0 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
2 Hb_007192_030 0.0535256329 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
3 Hb_004440_060 0.0792593293 - - aldose 1-epimerase, putative [Ricinus communis]
4 Hb_000392_550 0.0801832234 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000086_080 0.0816485964 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000394_180 0.0817787806 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
7 Hb_000622_290 0.0840802294 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
8 Hb_002053_010 0.0855296672 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
9 Hb_007904_230 0.0873336671 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
10 Hb_008695_200 0.087786536 - - Protein grpE, putative [Ricinus communis]
11 Hb_000317_260 0.0881118307 - - unknown [Populus trichocarpa]
12 Hb_001789_200 0.088831277 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
13 Hb_000510_030 0.0899184207 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
14 Hb_004644_030 0.0914928607 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
15 Hb_003266_030 0.0960932133 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_004951_060 0.0975917532 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
17 Hb_001301_340 0.0981865056 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
18 Hb_001711_120 0.0984762706 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_002762_110 0.0986334703 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001277_100 0.1018568383 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_001369_790 Hb_001369_790 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_004440_060 Hb_004440_060 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_007192_030--Hb_000086_080 Hb_007192_030--Hb_000394_180 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_073973_090 Hb_073973_090 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_011671_260 Hb_011671_260 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_000394_180--Hb_004951_060 Hb_001301_340 Hb_001301_340 Hb_000394_180--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_000394_180--Hb_006846_150 Hb_004257_010 Hb_004257_010 Hb_000394_180--Hb_004257_010 Hb_002762_110 Hb_002762_110 Hb_000622_290--Hb_002762_110 Hb_000622_290--Hb_004644_030 Hb_001946_380 Hb_001946_380 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53943 4.54346 22.4794 22.8978 4.84156 6.7861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.867 22.001 10.9501 12.0916 29.9313

CAGE analysis