Hb_001373_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1373: 8892-12716
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012084587.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067L8M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16885 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10300: 10763-11136 , PASA_asmbl_10301: 11726-12139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_117168_010 0.1355790189 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_000521_300 0.1461382161 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
4 Hb_002218_070 0.1494350892 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
5 Hb_004218_160 0.1545974917 - - NBS-LRR type disease resistance protein [Medicago truncatula]
6 Hb_007919_040 0.1589296227 - - PREDICTED: protein LYK5 [Jatropha curcas]
7 Hb_057079_020 0.1621125835 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000086_370 0.1651935397 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
9 Hb_001410_010 0.1668156557 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
10 Hb_007618_010 0.1672416772 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
11 Hb_000141_010 0.1673055056 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
12 Hb_000778_020 0.1677394582 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
13 Hb_002928_180 0.168195763 - - catalase CAT1 [Manihot esculenta]
14 Hb_006241_010 0.1682872741 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_008175_030 0.1696418575 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
16 Hb_000236_110 0.1735688407 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
17 Hb_003106_210 0.1740406284 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
18 Hb_002660_040 0.1741452175 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
19 Hb_000638_090 0.174194793 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_013749_060 0.1772769448 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]

Gene co-expression network

sample Hb_001373_010 Hb_001373_010 Hb_117168_010 Hb_117168_010 Hb_001373_010--Hb_117168_010 Hb_000521_300 Hb_000521_300 Hb_001373_010--Hb_000521_300 Hb_002218_070 Hb_002218_070 Hb_001373_010--Hb_002218_070 Hb_004218_160 Hb_004218_160 Hb_001373_010--Hb_004218_160 Hb_007919_040 Hb_007919_040 Hb_001373_010--Hb_007919_040 Hb_057079_020 Hb_057079_020 Hb_001373_010--Hb_057079_020 Hb_002551_090 Hb_002551_090 Hb_117168_010--Hb_002551_090 Hb_003576_050 Hb_003576_050 Hb_117168_010--Hb_003576_050 Hb_001091_020 Hb_001091_020 Hb_117168_010--Hb_001091_020 Hb_000086_370 Hb_000086_370 Hb_117168_010--Hb_000086_370 Hb_006241_010 Hb_006241_010 Hb_117168_010--Hb_006241_010 Hb_001252_040 Hb_001252_040 Hb_000521_300--Hb_001252_040 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_011214_140 Hb_011214_140 Hb_000521_300--Hb_011214_140 Hb_004195_190 Hb_004195_190 Hb_000521_300--Hb_004195_190 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_000085_230 Hb_000085_230 Hb_004218_160--Hb_000085_230 Hb_002660_040 Hb_002660_040 Hb_004218_160--Hb_002660_040 Hb_004007_120 Hb_004007_120 Hb_004218_160--Hb_004007_120 Hb_000527_140 Hb_000527_140 Hb_004218_160--Hb_000527_140 Hb_000120_070 Hb_000120_070 Hb_004218_160--Hb_000120_070 Hb_000977_090 Hb_000977_090 Hb_004218_160--Hb_000977_090 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_002291_020 Hb_002291_020 Hb_007919_040--Hb_002291_020 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0873842 2.28826 0.299517 0.725733 0.00958587 0.329406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044862 0.044131 0.186388 2.29359 0.775124

CAGE analysis