Hb_001373_020

Information

Type -
Description -
Location Contig1373: 9631-13235
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10298: 9820-10093 , PASA_asmbl_10299: 10229-10617 , PASA_asmbl_10302: 12205-12308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_020 0.0 - - -
2 Hb_002553_160 0.1433498027 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
3 Hb_011861_110 0.2288882397 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
4 Hb_007773_030 0.2304453186 - - -
5 Hb_006615_040 0.232310146 - - monoxygenase, putative [Ricinus communis]
6 Hb_001584_010 0.2361036585 - - kelch repeat protein, putative [Ricinus communis]
7 Hb_007137_030 0.2385035899 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
8 Hb_007253_040 0.2401329438 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
9 Hb_000699_190 0.2402313458 - - unknown [Populus trichocarpa]
10 Hb_001608_030 0.2454187506 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
11 Hb_003525_020 0.2469599958 - - conserved hypothetical protein [Ricinus communis]
12 Hb_141142_010 0.2481131202 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
13 Hb_001749_030 0.2497043216 - - -
14 Hb_001131_070 0.2510608221 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
15 Hb_000000_140 0.2517215213 - - -
16 Hb_000659_020 0.2537685321 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_010578_050 0.2543110996 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
18 Hb_001373_080 0.2578103354 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_010921_090 0.2598262122 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
20 Hb_008246_090 0.2608192948 - - -

Gene co-expression network

sample Hb_001373_020 Hb_001373_020 Hb_002553_160 Hb_002553_160 Hb_001373_020--Hb_002553_160 Hb_011861_110 Hb_011861_110 Hb_001373_020--Hb_011861_110 Hb_007773_030 Hb_007773_030 Hb_001373_020--Hb_007773_030 Hb_006615_040 Hb_006615_040 Hb_001373_020--Hb_006615_040 Hb_001584_010 Hb_001584_010 Hb_001373_020--Hb_001584_010 Hb_007137_030 Hb_007137_030 Hb_001373_020--Hb_007137_030 Hb_141142_010 Hb_141142_010 Hb_002553_160--Hb_141142_010 Hb_002553_160--Hb_011861_110 Hb_002553_160--Hb_001584_010 Hb_004976_060 Hb_004976_060 Hb_002553_160--Hb_004976_060 Hb_003175_020 Hb_003175_020 Hb_002553_160--Hb_003175_020 Hb_002461_080 Hb_002461_080 Hb_011861_110--Hb_002461_080 Hb_010921_090 Hb_010921_090 Hb_011861_110--Hb_010921_090 Hb_133636_010 Hb_133636_010 Hb_011861_110--Hb_133636_010 Hb_000088_160 Hb_000088_160 Hb_011861_110--Hb_000088_160 Hb_011861_110--Hb_007773_030 Hb_002783_320 Hb_002783_320 Hb_011861_110--Hb_002783_320 Hb_007441_060 Hb_007441_060 Hb_007773_030--Hb_007441_060 Hb_010578_050 Hb_010578_050 Hb_007773_030--Hb_010578_050 Hb_007773_030--Hb_133636_010 Hb_000035_300 Hb_000035_300 Hb_007773_030--Hb_000035_300 Hb_007773_030--Hb_002783_320 Hb_007773_030--Hb_001584_010 Hb_004230_060 Hb_004230_060 Hb_006615_040--Hb_004230_060 Hb_004976_040 Hb_004976_040 Hb_006615_040--Hb_004976_040 Hb_005147_040 Hb_005147_040 Hb_006615_040--Hb_005147_040 Hb_006615_040--Hb_001584_010 Hb_004466_070 Hb_004466_070 Hb_006615_040--Hb_004466_070 Hb_000107_440 Hb_000107_440 Hb_006615_040--Hb_000107_440 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.564172 0.159826 0.128132 0.0761658 0.0937302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.21147 0

CAGE analysis