Hb_001373_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1373: 63709-68118
Sequence    

Annotation

kegg
ID rcu:RCOM_1184740
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002527944.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID B9SPM5
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1184740 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10304: 66887-67036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_080 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_008554_010 0.0976186347 - - -
3 Hb_131591_010 0.1239872099 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_000431_180 0.1357704273 - - PREDICTED: peroxidase 55 [Jatropha curcas]
5 Hb_001691_190 0.1436244488 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002621_030 0.1611248806 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
7 Hb_002248_090 0.1612581672 - - metallothionein 3-like protein [Hevea brasiliensis]
8 Hb_151281_010 0.1614132875 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
9 Hb_017417_030 0.1630860071 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
10 Hb_000676_030 0.1642188568 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
11 Hb_000703_320 0.1700477776 - - receptor-kinase, putative [Ricinus communis]
12 Hb_079955_010 0.1707962094 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
13 Hb_000270_010 0.1738167969 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000331_690 0.1757229352 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
15 Hb_011928_030 0.1787074034 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
16 Hb_005000_200 0.1795798139 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
17 Hb_002461_080 0.1813085221 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
18 Hb_001863_100 0.1817680895 - - conserved hypothetical protein [Ricinus communis]
19 Hb_135811_060 0.182216093 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_001073_060 0.1823979162 - - phosphate transporter 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001373_080 Hb_001373_080 Hb_008554_010 Hb_008554_010 Hb_001373_080--Hb_008554_010 Hb_131591_010 Hb_131591_010 Hb_001373_080--Hb_131591_010 Hb_000431_180 Hb_000431_180 Hb_001373_080--Hb_000431_180 Hb_001691_190 Hb_001691_190 Hb_001373_080--Hb_001691_190 Hb_002621_030 Hb_002621_030 Hb_001373_080--Hb_002621_030 Hb_002248_090 Hb_002248_090 Hb_001373_080--Hb_002248_090 Hb_004195_030 Hb_004195_030 Hb_008554_010--Hb_004195_030 Hb_001131_070 Hb_001131_070 Hb_008554_010--Hb_001131_070 Hb_002461_080 Hb_002461_080 Hb_008554_010--Hb_002461_080 Hb_008554_010--Hb_000431_180 Hb_000331_690 Hb_000331_690 Hb_008554_010--Hb_000331_690 Hb_151281_010 Hb_151281_010 Hb_131591_010--Hb_151281_010 Hb_131591_010--Hb_002621_030 Hb_079955_010 Hb_079955_010 Hb_131591_010--Hb_079955_010 Hb_131591_010--Hb_001691_190 Hb_000676_030 Hb_000676_030 Hb_131591_010--Hb_000676_030 Hb_003090_060 Hb_003090_060 Hb_131591_010--Hb_003090_060 Hb_000703_320 Hb_000703_320 Hb_000431_180--Hb_000703_320 Hb_000270_010 Hb_000270_010 Hb_000431_180--Hb_000270_010 Hb_005147_020 Hb_005147_020 Hb_000431_180--Hb_005147_020 Hb_000431_180--Hb_131591_010 Hb_017661_020 Hb_017661_020 Hb_000431_180--Hb_017661_020 Hb_069232_010 Hb_069232_010 Hb_000431_180--Hb_069232_010 Hb_000170_230 Hb_000170_230 Hb_001691_190--Hb_000170_230 Hb_001691_190--Hb_000270_010 Hb_029866_140 Hb_029866_140 Hb_001691_190--Hb_029866_140 Hb_004586_380 Hb_004586_380 Hb_001691_190--Hb_004586_380 Hb_133646_010 Hb_133646_010 Hb_001691_190--Hb_133646_010 Hb_002621_030--Hb_003090_060 Hb_002621_030--Hb_079955_010 Hb_002621_030--Hb_000676_030 Hb_002621_030--Hb_151281_010 Hb_111985_060 Hb_111985_060 Hb_002621_030--Hb_111985_060 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.164773 0.0126057 0.0478005 0 0.00744223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0571735 0

CAGE analysis