Hb_001373_100

Information

Type -
Description -
Location Contig1373: 84065-87045
Sequence    

Annotation

kegg
ID rcu:RCOM_1183700
description hypothetical protein
nr
ID XP_002527940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPM1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1183700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_660 0.1457757051 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
3 Hb_003226_240 0.1502248067 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_001842_080 0.1551082041 - - -
5 Hb_000613_160 0.1567361606 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_003095_070 0.1633281626 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
7 Hb_012022_100 0.1652819857 - - CPRD49 family protein [Populus trichocarpa]
8 Hb_001922_080 0.1664842558 - - Tellurite resistance protein tehA, putative [Ricinus communis]
9 Hb_003211_050 0.1672668969 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
10 Hb_000032_350 0.1688138431 - - conserved hypothetical protein [Ricinus communis]
11 Hb_089100_030 0.1703548545 - - -
12 Hb_000300_210 0.1711957559 - - gd2b, putative [Ricinus communis]
13 Hb_002704_050 0.1745506299 - - cysteine-type peptidase, putative [Ricinus communis]
14 Hb_004545_130 0.174903611 - - uncharacterized protein LOC100305465 [Glycine max]
15 Hb_000398_030 0.1753365749 - - conserved hypothetical protein [Ricinus communis]
16 Hb_039946_010 0.1757114535 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
17 Hb_001102_250 0.178075489 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
18 Hb_000103_550 0.1785374017 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
19 Hb_001276_060 0.1788264887 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
20 Hb_000270_730 0.1790397302 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_001373_100 Hb_001373_100 Hb_000329_660 Hb_000329_660 Hb_001373_100--Hb_000329_660 Hb_003226_240 Hb_003226_240 Hb_001373_100--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_001373_100--Hb_001842_080 Hb_000613_160 Hb_000613_160 Hb_001373_100--Hb_000613_160 Hb_003095_070 Hb_003095_070 Hb_001373_100--Hb_003095_070 Hb_012022_100 Hb_012022_100 Hb_001373_100--Hb_012022_100 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_000387_060 Hb_000387_060 Hb_000329_660--Hb_000387_060 Hb_000300_210 Hb_000300_210 Hb_000329_660--Hb_000300_210 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_002989_040 Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_000270_730 Hb_000270_730 Hb_001842_080--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_001842_080--Hb_001922_080 Hb_001842_080--Hb_032202_250 Hb_000316_100 Hb_000316_100 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_000788_080 Hb_000788_080 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_003095_070--Hb_001276_060 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_002043_120 Hb_002043_120 Hb_012022_100--Hb_002043_120 Hb_000792_120 Hb_000792_120 Hb_012022_100--Hb_000792_120 Hb_012022_100--Hb_002704_050 Hb_012022_100--Hb_003226_240 Hb_012022_100--Hb_000329_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.995707 0 0.193193 0.127884 0.0389635 0.119642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55955 7.032 2.39165 0.4333 0.147079

CAGE analysis