Hb_001373_150

Information

Type -
Description -
Location Contig1373: 111908-115613
Sequence    

Annotation

kegg
ID cit:102625126
description uncharacterized LOC102625126
nr
ID XP_012065648.1
description PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16906 PE=4 SV=1
Gene Ontology
ID GO:0005886
description late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10308: 111698-115591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_150 0.0 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
2 Hb_030565_130 0.1243926507 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
3 Hb_002301_290 0.1271337928 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_008554_020 0.1276005385 - - -
5 Hb_002235_400 0.1309079499 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
6 Hb_000184_040 0.1494724208 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
7 Hb_006501_110 0.1523340178 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
8 Hb_004787_090 0.1610882128 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
9 Hb_001863_480 0.1625350334 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
10 Hb_035273_030 0.162972092 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
11 Hb_046157_020 0.1634547017 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
12 Hb_002471_100 0.1642967833 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
13 Hb_002805_290 0.1666877913 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
14 Hb_000481_020 0.168426015 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
15 Hb_003052_100 0.1697708305 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_002681_020 0.1703751695 - - aldose 1-epimerase, putative [Ricinus communis]
17 Hb_089685_010 0.1708618734 - - -
18 Hb_023226_090 0.1711361685 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
19 Hb_157022_020 0.1719354508 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
20 Hb_002681_110 0.1723215257 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]

Gene co-expression network

sample Hb_001373_150 Hb_001373_150 Hb_030565_130 Hb_030565_130 Hb_001373_150--Hb_030565_130 Hb_002301_290 Hb_002301_290 Hb_001373_150--Hb_002301_290 Hb_008554_020 Hb_008554_020 Hb_001373_150--Hb_008554_020 Hb_002235_400 Hb_002235_400 Hb_001373_150--Hb_002235_400 Hb_000184_040 Hb_000184_040 Hb_001373_150--Hb_000184_040 Hb_006501_110 Hb_006501_110 Hb_001373_150--Hb_006501_110 Hb_006570_070 Hb_006570_070 Hb_030565_130--Hb_006570_070 Hb_000318_100 Hb_000318_100 Hb_030565_130--Hb_000318_100 Hb_157022_020 Hb_157022_020 Hb_030565_130--Hb_157022_020 Hb_000174_070 Hb_000174_070 Hb_030565_130--Hb_000174_070 Hb_007140_020 Hb_007140_020 Hb_030565_130--Hb_007140_020 Hb_002471_100 Hb_002471_100 Hb_002301_290--Hb_002471_100 Hb_002301_290--Hb_008554_020 Hb_000390_200 Hb_000390_200 Hb_002301_290--Hb_000390_200 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_002301_290--Hb_006501_110 Hb_007254_040 Hb_007254_040 Hb_008554_020--Hb_007254_040 Hb_007317_180 Hb_007317_180 Hb_008554_020--Hb_007317_180 Hb_008554_020--Hb_004310_030 Hb_011310_190 Hb_011310_190 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_002235_400--Hb_003052_100 Hb_003050_230 Hb_003050_230 Hb_002235_400--Hb_003050_230 Hb_002411_200 Hb_002411_200 Hb_002235_400--Hb_002411_200 Hb_001711_030 Hb_001711_030 Hb_002235_400--Hb_001711_030 Hb_002681_020 Hb_002681_020 Hb_002235_400--Hb_002681_020 Hb_000922_270 Hb_000922_270 Hb_002235_400--Hb_000922_270 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_000184_040--Hb_002235_400 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_006501_110--Hb_000390_200 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.5079 4.46268 8.91126 19.7163 13.0185 32.3143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.3645 21.5411 31.7702 18.1545 4.79393

CAGE analysis