Hb_001373_180

Information

Type -
Description -
Location Contig1373: 135273-142845
Sequence    

Annotation

kegg
ID rcu:RCOM_0247960
description hypothetical protein
nr
ID XP_012065652.1
description PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10313: 140367-140872 , PASA_asmbl_10315: 142167-142589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_180 0.0 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
2 Hb_013607_040 0.0770938849 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
3 Hb_000189_140 0.0860804887 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004846_070 0.0930711992 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
5 Hb_000723_080 0.094140566 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_000002_050 0.0976218133 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
7 Hb_002235_280 0.1024234197 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
8 Hb_019263_020 0.1026017589 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
9 Hb_002307_170 0.1048221632 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_008695_100 0.1065553654 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
11 Hb_011534_030 0.1065630474 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
12 Hb_010608_050 0.1127463949 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
13 Hb_005162_070 0.1132508689 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005188_020 0.1138645384 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
15 Hb_001140_220 0.1149142886 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_003020_220 0.1153664508 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
17 Hb_002878_020 0.1159009242 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_001454_190 0.1160597872 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
19 Hb_001969_090 0.1181422194 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
20 Hb_002585_020 0.1196818536 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]

Gene co-expression network

sample Hb_001373_180 Hb_001373_180 Hb_013607_040 Hb_013607_040 Hb_001373_180--Hb_013607_040 Hb_000189_140 Hb_000189_140 Hb_001373_180--Hb_000189_140 Hb_004846_070 Hb_004846_070 Hb_001373_180--Hb_004846_070 Hb_000723_080 Hb_000723_080 Hb_001373_180--Hb_000723_080 Hb_000002_050 Hb_000002_050 Hb_001373_180--Hb_000002_050 Hb_002235_280 Hb_002235_280 Hb_001373_180--Hb_002235_280 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_013607_040--Hb_002235_280 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070 Hb_000189_140--Hb_013607_040 Hb_011242_040 Hb_011242_040 Hb_000189_140--Hb_011242_040 Hb_001140_220 Hb_001140_220 Hb_000189_140--Hb_001140_220 Hb_000317_280 Hb_000317_280 Hb_000189_140--Hb_000317_280 Hb_007747_200 Hb_007747_200 Hb_000189_140--Hb_007747_200 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_004846_070--Hb_000002_050 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_001454_190 Hb_001454_190 Hb_000002_050--Hb_001454_190 Hb_000002_050--Hb_007747_200 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_002235_280--Hb_008695_100 Hb_002235_280--Hb_001140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8497 7.87068 2.01027 2.83049 3.26748 7.65958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46912 13.577 16.7371 6.39727 9.34641

CAGE analysis