Hb_001375_040

Information

Type -
Description -
Location Contig1375: 118435-125180
Sequence    

Annotation

kegg
ID rcu:RCOM_0617610
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002527764.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9ZVD5
description Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2
trembl
ID B9SP45
description Eukaryotic translation initiation factor 2c, putative OS=Ricinus communis GN=RCOM_0617610 PE=4 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10339: 118404-125024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001375_040 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_015026_100 0.1033792694 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
3 Hb_033554_020 0.1141906082 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
4 Hb_001373_160 0.1156675776 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
5 Hb_002025_270 0.1178950703 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
6 Hb_002259_110 0.123600345 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_005181_040 0.1247122878 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
8 Hb_002092_070 0.1255077774 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
9 Hb_000184_150 0.1267942212 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
10 Hb_006618_090 0.1274463814 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
11 Hb_000134_250 0.1288641332 - - protein with unknown function [Ricinus communis]
12 Hb_001733_030 0.1292372847 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
13 Hb_002045_250 0.1301774043 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
14 Hb_013358_070 0.1316173368 - - protein with unknown function [Ricinus communis]
15 Hb_001723_140 0.132531083 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
16 Hb_006501_010 0.1353594733 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
17 Hb_000994_020 0.135978535 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
18 Hb_086287_010 0.1361539235 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
19 Hb_001492_040 0.1361733358 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_005323_010 0.1374970021 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]

Gene co-expression network

sample Hb_001375_040 Hb_001375_040 Hb_015026_100 Hb_015026_100 Hb_001375_040--Hb_015026_100 Hb_033554_020 Hb_033554_020 Hb_001375_040--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_001375_040--Hb_001373_160 Hb_002025_270 Hb_002025_270 Hb_001375_040--Hb_002025_270 Hb_002259_110 Hb_002259_110 Hb_001375_040--Hb_002259_110 Hb_005181_040 Hb_005181_040 Hb_001375_040--Hb_005181_040 Hb_000994_020 Hb_000994_020 Hb_015026_100--Hb_000994_020 Hb_000046_600 Hb_000046_600 Hb_015026_100--Hb_000046_600 Hb_002092_070 Hb_002092_070 Hb_015026_100--Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_015026_100--Hb_002045_250 Hb_008397_010 Hb_008397_010 Hb_015026_100--Hb_008397_010 Hb_006501_010 Hb_006501_010 Hb_015026_100--Hb_006501_010 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_033554_020--Hb_000994_020 Hb_033554_020--Hb_006501_010 Hb_000134_250 Hb_000134_250 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_010287_030 Hb_010287_030 Hb_001373_160--Hb_010287_030 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_024758_020 Hb_024758_020 Hb_002025_270--Hb_024758_020 Hb_002809_160 Hb_002809_160 Hb_002025_270--Hb_002809_160 Hb_003050_150 Hb_003050_150 Hb_002025_270--Hb_003050_150 Hb_002553_010 Hb_002553_010 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_001133_090 Hb_001133_090 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_002259_110--Hb_000134_250 Hb_002259_110--Hb_001373_160 Hb_000086_150 Hb_000086_150 Hb_005181_040--Hb_000086_150 Hb_001040_070 Hb_001040_070 Hb_005181_040--Hb_001040_070 Hb_005181_040--Hb_000243_130 Hb_003470_070 Hb_003470_070 Hb_005181_040--Hb_003470_070 Hb_009486_080 Hb_009486_080 Hb_005181_040--Hb_009486_080 Hb_002461_020 Hb_002461_020 Hb_005181_040--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69868 14.6442 15.1133 10.9916 12.277 14.0199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11274 0.91137 1.55268 14.5979 9.18126

CAGE analysis