Hb_001377_010

Information

Type -
Description -
Location Contig1377: 12445-13252
Sequence    

Annotation

kegg
ID mdm:103439341
description transcription factor CPC-like
nr
ID XP_012083240.1
description PREDICTED: transcription factor TRY-like [Jatropha curcas]
swissprot
ID Q8GV05
description Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1
trembl
ID A0A059BZI7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00069 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_010 0.0 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
2 Hb_001136_030 0.0504397443 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
3 Hb_002870_010 0.0656064847 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
4 Hb_001104_210 0.0757908801 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
5 Hb_000911_050 0.0989195895 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
6 Hb_001514_070 0.1091544478 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003090_180 0.1092995203 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
8 Hb_000487_240 0.1118282808 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
9 Hb_036069_020 0.121069845 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
10 Hb_000025_740 0.1210999197 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
11 Hb_000393_030 0.1220283813 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_012807_140 0.1261215935 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
13 Hb_004881_060 0.1274585713 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
14 Hb_002122_040 0.132832305 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000276_030 0.1330686722 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_130563_010 0.1335572637 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
17 Hb_005211_090 0.1343695791 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
18 Hb_000580_070 0.1347341412 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_159015_010 0.1356671881 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_008692_020 0.1371418459 - - -

Gene co-expression network

sample Hb_001377_010 Hb_001377_010 Hb_001136_030 Hb_001136_030 Hb_001377_010--Hb_001136_030 Hb_002870_010 Hb_002870_010 Hb_001377_010--Hb_002870_010 Hb_001104_210 Hb_001104_210 Hb_001377_010--Hb_001104_210 Hb_000911_050 Hb_000911_050 Hb_001377_010--Hb_000911_050 Hb_001514_070 Hb_001514_070 Hb_001377_010--Hb_001514_070 Hb_003090_180 Hb_003090_180 Hb_001377_010--Hb_003090_180 Hb_001136_030--Hb_001104_210 Hb_001136_030--Hb_002870_010 Hb_001136_030--Hb_003090_180 Hb_004881_060 Hb_004881_060 Hb_001136_030--Hb_004881_060 Hb_001136_030--Hb_000911_050 Hb_002870_010--Hb_001514_070 Hb_002870_010--Hb_001104_210 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140 Hb_002870_010--Hb_003090_180 Hb_001104_210--Hb_003090_180 Hb_001104_210--Hb_004881_060 Hb_000025_740 Hb_000025_740 Hb_001104_210--Hb_000025_740 Hb_000797_030 Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040 Hb_000393_030 Hb_000393_030 Hb_001514_070--Hb_000393_030 Hb_005211_090 Hb_005211_090 Hb_001514_070--Hb_005211_090 Hb_001470_040 Hb_001470_040 Hb_001514_070--Hb_001470_040 Hb_001329_110 Hb_001329_110 Hb_001514_070--Hb_001329_110 Hb_000963_010 Hb_000963_010 Hb_001514_070--Hb_000963_010 Hb_003090_180--Hb_004881_060 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_003090_180--Hb_000025_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.82697 0.792788 3.41898 0 0.112536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.9958 1.91521

CAGE analysis