Hb_001377_050

Information

Type -
Description -
Location Contig1377: 42183-45266
Sequence    

Annotation

kegg
ID rcu:RCOM_0719440
description hypothetical protein
nr
ID XP_012083234.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K891
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14276 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_050 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_002804_050 0.1582349812 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
3 Hb_006615_100 0.1673020592 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
4 Hb_001633_100 0.1716400544 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
5 Hb_002783_050 0.1737496579 - - zinc finger protein, putative [Ricinus communis]
6 Hb_030414_050 0.1777795788 - - -
7 Hb_000093_130 0.1794302264 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_089435_010 0.1794357931 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
9 Hb_001529_060 0.1831420149 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
10 Hb_001703_130 0.183304465 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
11 Hb_000281_010 0.1847085116 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
12 Hb_000116_570 0.1853303345 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
13 Hb_009646_050 0.1922436032 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005052_010 0.1923733115 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
15 Hb_000685_080 0.1935549388 - - protein binding protein, putative [Ricinus communis]
16 Hb_183510_010 0.1944271954 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
17 Hb_103624_010 0.19466493 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
18 Hb_000836_050 0.1954778271 - - -
19 Hb_060437_010 0.1967025082 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
20 Hb_005144_040 0.1967846984 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_001377_050 Hb_001377_050 Hb_002804_050 Hb_002804_050 Hb_001377_050--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_001377_050--Hb_006615_100 Hb_001633_100 Hb_001633_100 Hb_001377_050--Hb_001633_100 Hb_002783_050 Hb_002783_050 Hb_001377_050--Hb_002783_050 Hb_030414_050 Hb_030414_050 Hb_001377_050--Hb_030414_050 Hb_000093_130 Hb_000093_130 Hb_001377_050--Hb_000093_130 Hb_002804_050--Hb_006615_100 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002849_080 Hb_002849_080 Hb_002804_050--Hb_002849_080 Hb_002804_050--Hb_002783_050 Hb_003106_150 Hb_003106_150 Hb_002804_050--Hb_003106_150 Hb_010128_070 Hb_010128_070 Hb_002804_050--Hb_010128_070 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_000016_280 Hb_000016_280 Hb_001633_100--Hb_000016_280 Hb_183510_010 Hb_183510_010 Hb_001633_100--Hb_183510_010 Hb_000322_170 Hb_000322_170 Hb_001633_100--Hb_000322_170 Hb_001633_100--Hb_000093_130 Hb_002843_100 Hb_002843_100 Hb_001633_100--Hb_002843_100 Hb_000116_570 Hb_000116_570 Hb_001633_100--Hb_000116_570 Hb_002783_050--Hb_000116_570 Hb_001247_230 Hb_001247_230 Hb_002783_050--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_002783_050--Hb_010883_080 Hb_002783_050--Hb_006615_100 Hb_002783_050--Hb_000281_010 Hb_060437_010 Hb_060437_010 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_030414_050--Hb_000093_130 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06201 0.546037 0.214662 0.0185923 0.675743 0.706213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0496254 0.117093 0.287682 0.141208 0

CAGE analysis