Hb_001377_060

Information

Type -
Description -
Location Contig1377: 47739-50567
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09270g
description POPTRDRAFT_774489; hypothetical protein
nr
ID XP_012083233.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
swissprot
ID Q9SV26
description Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2
trembl
ID B9I8W6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09270g PE=4 SV=2
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10366: 47710-47902 , PASA_asmbl_10368: 49130-49492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
2 Hb_002835_090 0.1000071058 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
3 Hb_000254_120 0.1156791395 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004712_200 0.1230879219 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
5 Hb_000193_220 0.1239242596 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
6 Hb_010721_020 0.1275061424 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
7 Hb_001584_050 0.1283175433 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_001907_080 0.1296616865 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
9 Hb_000966_040 0.1322216725 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
10 Hb_000723_320 0.1324165621 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_000035_340 0.1343814464 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000029_330 0.1344858009 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
13 Hb_011900_020 0.1401257472 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
14 Hb_000359_160 0.1409094908 - - PREDICTED: protein CAJ1 [Jatropha curcas]
15 Hb_003602_030 0.1409425663 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
16 Hb_011649_010 0.1413958013 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
17 Hb_001421_040 0.14380681 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]
18 Hb_007982_040 0.1452612876 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_000118_090 0.145787168 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_001257_110 0.1461669305 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_060 Hb_001377_060 Hb_002835_090 Hb_002835_090 Hb_001377_060--Hb_002835_090 Hb_000254_120 Hb_000254_120 Hb_001377_060--Hb_000254_120 Hb_004712_200 Hb_004712_200 Hb_001377_060--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_001377_060--Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_001377_060--Hb_010721_020 Hb_001584_050 Hb_001584_050 Hb_001377_060--Hb_001584_050 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_003602_030 Hb_003602_030 Hb_000254_120--Hb_003602_030 Hb_000254_120--Hb_002835_090 Hb_000254_120--Hb_001584_050 Hb_005332_150 Hb_005332_150 Hb_000254_120--Hb_005332_150 Hb_000254_120--Hb_011900_020 Hb_000966_040 Hb_000966_040 Hb_004712_200--Hb_000966_040 Hb_000975_050 Hb_000975_050 Hb_004712_200--Hb_000975_050 Hb_001266_160 Hb_001266_160 Hb_004712_200--Hb_001266_160 Hb_009692_040 Hb_009692_040 Hb_004712_200--Hb_009692_040 Hb_004712_200--Hb_000193_220 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000193_220--Hb_000966_040 Hb_010721_020--Hb_002811_250 Hb_010721_020--Hb_000118_090 Hb_010721_020--Hb_007982_040 Hb_000045_050 Hb_000045_050 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_000107_540 Hb_000107_540 Hb_001584_050--Hb_000107_540 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001377_210 Hb_001377_210 Hb_001584_050--Hb_001377_210 Hb_002333_040 Hb_002333_040 Hb_001584_050--Hb_002333_040 Hb_001257_110 Hb_001257_110 Hb_001584_050--Hb_001257_110 Hb_000011_440 Hb_000011_440 Hb_001584_050--Hb_000011_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.607722 1.4328 4.47724 2.21965 0.561433 0.74642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309196 0.121655 0.0232476 0.695076 13.508

CAGE analysis