Hb_001377_100

Information

Type -
Description -
Location Contig1377: 78579-89055
Sequence    

Annotation

kegg
ID rcu:RCOM_0719270
description hypothetical protein
nr
ID XP_012083227.1
description PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14272 PE=4 SV=1
Gene Ontology
ID GO:0016779
description PREDICTED: uncharacterized protein LOC105642863 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10378: 79258-85079 , PASA_asmbl_10379: 81253-81587 , PASA_asmbl_10380: 85209-85422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_100 0.0 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
2 Hb_009486_090 0.0549795896 - - RNA binding protein, putative [Ricinus communis]
3 Hb_006031_010 0.0561331211 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
4 Hb_135572_010 0.0574073783 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_005186_040 0.0602299004 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
6 Hb_012244_020 0.0610528165 - - calpain, putative [Ricinus communis]
7 Hb_000059_230 0.0641898053 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
8 Hb_002521_020 0.0644840463 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
9 Hb_000363_300 0.0648685277 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
10 Hb_006839_010 0.0658534324 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
11 Hb_011174_020 0.0695298104 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
12 Hb_000196_060 0.0695688047 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_000925_090 0.0702738306 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
14 Hb_001133_030 0.0705164388 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
15 Hb_001377_350 0.070907413 - - PREDICTED: exportin-2 [Jatropha curcas]
16 Hb_001124_050 0.0723117679 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
17 Hb_003040_050 0.0731701575 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
18 Hb_004374_110 0.0733988968 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
19 Hb_005977_070 0.0744847386 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_001648_020 0.0746802912 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]

Gene co-expression network

sample Hb_001377_100 Hb_001377_100 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_009486_090--Hb_006031_010 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_006031_010--Hb_012244_020 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_012244_020--Hb_000363_300 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_006839_010 Hb_006839_010 Hb_000059_230--Hb_006839_010 Hb_009288_020 Hb_009288_020 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_003040_050 Hb_003040_050 Hb_000059_230--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21502 8.84887 4.44356 6.33798 4.21824 5.82912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83084 2.8208 4.91727 7.83486 11.4922

CAGE analysis