Hb_001377_160

Information

Type -
Description -
Location Contig1377: 140575-143423
Sequence    

Annotation

kegg
ID rcu:RCOM_0718480
description hypothetical protein
nr
ID XP_012083219.1
description PREDICTED: protein SDE2 homolog [Jatropha curcas]
swissprot
ID Q07G43
description Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1
trembl
ID A0A067K9K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14265 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein sde2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10393: 140551-143466
cDNA
(Sanger)
(ID:Location)		 028_O01.ab1: 140570-141209 , 043_B24.ab1: 140588-141249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_160 0.0 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
2 Hb_003943_010 0.0493825634 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004668_060 0.0506762233 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
4 Hb_003120_080 0.0569427374 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
5 Hb_000398_080 0.0647237812 - - tip120, putative [Ricinus communis]
6 Hb_003498_120 0.0649616192 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
7 Hb_000139_130 0.0667367954 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
8 Hb_001235_140 0.067375982 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
9 Hb_007123_030 0.0680487848 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
10 Hb_001946_340 0.0694516818 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
11 Hb_001318_020 0.0697495795 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
12 Hb_007083_030 0.0708337355 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
13 Hb_007657_020 0.0724170299 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
14 Hb_007508_080 0.0724218759 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
15 Hb_012395_140 0.0730671117 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_000579_230 0.073422385 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
17 Hb_140049_080 0.0734654754 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
18 Hb_004109_230 0.0742906701 - - heat shock protein binding protein, putative [Ricinus communis]
19 Hb_002815_030 0.0744825178 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
20 Hb_001033_050 0.0755247112 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]

Gene co-expression network

sample Hb_001377_160 Hb_001377_160 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_004668_060--Hb_000139_130 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_004586_290 Hb_004586_290 Hb_003120_080--Hb_004586_290 Hb_004143_100 Hb_004143_100 Hb_003120_080--Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_003120_080--Hb_000402_230 Hb_011849_040 Hb_011849_040 Hb_003120_080--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_003120_080--Hb_000009_500 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2875 33.8196 19.1253 24.7918 27.0579 27.1141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4803 12.0851 12.8454 29.7071 19.9708

CAGE analysis