Hb_001377_180

Information

Type -
Description -
Location Contig1377: 147963-151999
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012067244.1
description PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBB3
description Glucose-1-phosphate adenylyltransferase OS=Jatropha curcas GN=JCGZ_26788 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10394: 146872-150808 , PASA_asmbl_10395: 146879-152092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_180 0.0 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
2 Hb_000155_180 0.0546974167 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
3 Hb_136731_010 0.0979651435 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
4 Hb_000771_100 0.1030207278 - - Os06g0527300 [Oryza sativa Japonica Group]
5 Hb_002374_020 0.1097788691 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
6 Hb_003994_270 0.1110374644 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
7 Hb_003011_040 0.113479113 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
8 Hb_000080_060 0.1176734132 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
9 Hb_152554_010 0.1195016168 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
10 Hb_002272_260 0.1198030417 - - -
11 Hb_005367_010 0.1208771337 - - -
12 Hb_184570_010 0.1214847039 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
13 Hb_010180_010 0.1298099607 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
14 Hb_031089_040 0.1337021711 - - thioredoxin H-type 1 [Hevea brasiliensis]
15 Hb_004223_220 0.1339633288 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
16 Hb_006487_050 0.134115207 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
17 Hb_000176_120 0.1350012576 - - seryl-tRNA synthetase, putative [Ricinus communis]
18 Hb_006487_060 0.1350619559 - - Defective in cullin neddylation protein, putative [Ricinus communis]
19 Hb_004502_020 0.1355257889 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
20 Hb_086703_010 0.1363168556 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_180 Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_001377_180--Hb_000155_180 Hb_136731_010 Hb_136731_010 Hb_001377_180--Hb_136731_010 Hb_000771_100 Hb_000771_100 Hb_001377_180--Hb_000771_100 Hb_002374_020 Hb_002374_020 Hb_001377_180--Hb_002374_020 Hb_003994_270 Hb_003994_270 Hb_001377_180--Hb_003994_270 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_000155_180--Hb_000771_100 Hb_000155_180--Hb_003011_040 Hb_004502_020 Hb_004502_020 Hb_000155_180--Hb_004502_020 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010 Hb_000771_100--Hb_002272_260 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290 Hb_002671_100 Hb_002671_100 Hb_002374_020--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_002374_020--Hb_004934_070 Hb_144598_030 Hb_144598_030 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_005862_010 Hb_005862_010 Hb_002374_020--Hb_005862_010 Hb_000641_020 Hb_000641_020 Hb_003994_270--Hb_000641_020 Hb_003994_270--Hb_000155_180 Hb_000215_200 Hb_000215_200 Hb_003994_270--Hb_000215_200 Hb_012653_040 Hb_012653_040 Hb_003994_270--Hb_012653_040 Hb_003994_270--Hb_000771_100 Hb_004223_220 Hb_004223_220 Hb_003011_040--Hb_004223_220 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_001269_320 Hb_001269_320 Hb_003011_040--Hb_001269_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03732 0.607665 1.1512 4.39273 2.27722 8.50394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.98006 4.47038 1.36569 1.42149 1.00138

CAGE analysis