Hb_001377_210

Information

Type -
Description -
Location Contig1377: 212680-228031
Sequence    

Annotation

kegg
ID rcu:RCOM_0718430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012083215.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID F4J5S1
description Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1
trembl
ID A0A067K877
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14261 PE=4 SV=1
Gene Ontology
ID GO:0005515
description clustered mitochondria protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10401: 212875-215474 , PASA_asmbl_10402: 216196-227802 , PASA_asmbl_10403: 216196-227038 , PASA_asmbl_10404: 227492-227832 , PASA_asmbl_10405: 216636-223257 , PASA_asmbl_10407: 223345-223474 , PASA_asmbl_10408: 227147-227745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_210 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_000914_190 0.0980950552 - - xanthine dehydrogenase, putative [Ricinus communis]
3 Hb_000107_540 0.1016547046 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
4 Hb_001584_050 0.1102975403 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_004162_250 0.1279731409 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
6 Hb_000608_360 0.1329029122 - - calreticulin, putative [Ricinus communis]
7 Hb_006915_010 0.1351427611 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000092_060 0.1373503096 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
9 Hb_000041_250 0.1375840753 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
10 Hb_011900_020 0.138000145 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
11 Hb_001300_160 0.1396626041 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
12 Hb_000966_040 0.139886774 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
13 Hb_005348_120 0.1412267863 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
14 Hb_001517_010 0.1453223041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000856_280 0.1491714384 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
16 Hb_000035_340 0.1531362746 - - conserved hypothetical protein [Ricinus communis]
17 Hb_134949_010 0.1540129178 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
18 Hb_004712_200 0.15502089 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
19 Hb_000359_070 0.1553325987 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
20 Hb_000193_220 0.1553341024 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001377_210 Hb_001377_210 Hb_000914_190 Hb_000914_190 Hb_001377_210--Hb_000914_190 Hb_000107_540 Hb_000107_540 Hb_001377_210--Hb_000107_540 Hb_001584_050 Hb_001584_050 Hb_001377_210--Hb_001584_050 Hb_004162_250 Hb_004162_250 Hb_001377_210--Hb_004162_250 Hb_000608_360 Hb_000608_360 Hb_001377_210--Hb_000608_360 Hb_006915_010 Hb_006915_010 Hb_001377_210--Hb_006915_010 Hb_000092_060 Hb_000092_060 Hb_000914_190--Hb_000092_060 Hb_004242_200 Hb_004242_200 Hb_000914_190--Hb_004242_200 Hb_015978_090 Hb_015978_090 Hb_000914_190--Hb_015978_090 Hb_000914_190--Hb_006915_010 Hb_000011_440 Hb_000011_440 Hb_000914_190--Hb_000011_440 Hb_001517_010 Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_000107_540--Hb_004162_250 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001584_050--Hb_002333_040 Hb_001257_110 Hb_001257_110 Hb_001584_050--Hb_001257_110 Hb_001584_050--Hb_000011_440 Hb_004162_250--Hb_005348_120 Hb_000041_250 Hb_000041_250 Hb_004162_250--Hb_000041_250 Hb_004162_250--Hb_006915_010 Hb_004162_250--Hb_002333_040 Hb_004162_250--Hb_001517_010 Hb_004724_180 Hb_004724_180 Hb_000608_360--Hb_004724_180 Hb_003141_060 Hb_003141_060 Hb_000608_360--Hb_003141_060 Hb_000640_330 Hb_000640_330 Hb_000608_360--Hb_000640_330 Hb_006277_080 Hb_006277_080 Hb_000608_360--Hb_006277_080 Hb_001300_160 Hb_001300_160 Hb_000608_360--Hb_001300_160 Hb_002276_030 Hb_002276_030 Hb_000608_360--Hb_002276_030 Hb_000638_100 Hb_000638_100 Hb_006915_010--Hb_000638_100 Hb_006915_010--Hb_000041_250 Hb_006915_010--Hb_000107_540 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17806 3.83229 24.3097 7.78376 1.38877 0.817194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.794248 0.917792 1.0533 9.48419 66.8812

CAGE analysis