Hb_001377_230

Information

Type -
Description -
Location Contig1377: 231919-232967
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09430g
description hypothetical protein
nr
ID XP_011038208.1
description PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FV31
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_230 0.0 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
2 Hb_000328_030 0.0482742883 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
3 Hb_000086_490 0.0625596266 - - cellulose synthase [Populus tomentosa]
4 Hb_042083_010 0.0691151584 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
5 Hb_005523_030 0.0765326773 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
6 Hb_015807_090 0.078631099 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_000165_260 0.0821648809 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
8 Hb_005686_040 0.083254703 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001377_220 0.0865766148 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_000245_110 0.0866799517 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
11 Hb_000776_090 0.0866856931 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
12 Hb_001051_060 0.0871810979 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_007227_030 0.0905848456 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
14 Hb_002078_180 0.0924002266 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
15 Hb_012633_020 0.0926051835 - - laccase, putative [Ricinus communis]
16 Hb_001189_080 0.093172324 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001935_060 0.0942379835 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
18 Hb_003090_190 0.0942831924 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
19 Hb_003747_160 0.0972619549 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002311_010 0.0973190953 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_230 Hb_001377_230 Hb_000328_030 Hb_000328_030 Hb_001377_230--Hb_000328_030 Hb_000086_490 Hb_000086_490 Hb_001377_230--Hb_000086_490 Hb_042083_010 Hb_042083_010 Hb_001377_230--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_001377_230--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_001377_230--Hb_015807_090 Hb_000165_260 Hb_000165_260 Hb_001377_230--Hb_000165_260 Hb_000328_030--Hb_000086_490 Hb_000328_030--Hb_000165_260 Hb_000328_030--Hb_042083_010 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_000086_490--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_000086_490--Hb_001051_060 Hb_002078_180 Hb_002078_180 Hb_000086_490--Hb_002078_180 Hb_042083_010--Hb_015807_090 Hb_042083_010--Hb_000086_490 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_005523_030--Hb_015807_090 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040 Hb_003090_190 Hb_003090_190 Hb_000165_260--Hb_003090_190 Hb_000311_100 Hb_000311_100 Hb_000165_260--Hb_000311_100 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_001712_030 Hb_001712_030 Hb_000165_260--Hb_001712_030 Hb_000165_260--Hb_000086_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.43414 0.269178 4.713 0.0434509 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.35644

CAGE analysis