Hb_001377_260

Information

Type -
Description -
Location Contig1377: 261945-264699
Sequence    

Annotation

kegg
ID rcu:RCOM_0718360
description protein with unknown function
nr
ID XP_002523344.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9ZPY9
description Phosphatidylinositol 4-kinase gamma 4 OS=Arabidopsis thaliana GN=PI4KG4 PE=1 SV=1
trembl
ID B9SBH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0718360 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phosphatidylinositol 4-kinase gamma 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10411: 262166-263397 , PASA_asmbl_10412: 263399-264621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_260 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000140_380 0.0887199888 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
3 Hb_004078_040 0.0912237237 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
4 Hb_086639_010 0.0917432734 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005051_020 0.0926072331 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
6 Hb_000430_020 0.096277536 - - -
7 Hb_000890_150 0.0993857318 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
8 Hb_000173_470 0.1041563641 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
9 Hb_001014_030 0.1049493036 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002754_010 0.1051147699 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_000164_020 0.1053371702 - - actin binding protein, putative [Ricinus communis]
12 Hb_005245_100 0.1063381689 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
13 Hb_000406_140 0.1085260202 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003544_110 0.1086324975 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
15 Hb_000856_010 0.1095706684 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
16 Hb_015807_150 0.1095921579 - - actin binding protein, putative [Ricinus communis]
17 Hb_005074_030 0.1103379048 - - -
18 Hb_002620_020 0.1105226889 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
19 Hb_000925_130 0.1106564979 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
20 Hb_002450_020 0.111116499 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_260 Hb_001377_260 Hb_000140_380 Hb_000140_380 Hb_001377_260--Hb_000140_380 Hb_004078_040 Hb_004078_040 Hb_001377_260--Hb_004078_040 Hb_086639_010 Hb_086639_010 Hb_001377_260--Hb_086639_010 Hb_005051_020 Hb_005051_020 Hb_001377_260--Hb_005051_020 Hb_000430_020 Hb_000430_020 Hb_001377_260--Hb_000430_020 Hb_000890_150 Hb_000890_150 Hb_001377_260--Hb_000890_150 Hb_000252_100 Hb_000252_100 Hb_000140_380--Hb_000252_100 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000173_410 Hb_000173_410 Hb_000140_380--Hb_000173_410 Hb_000140_380--Hb_000890_150 Hb_000454_090 Hb_000454_090 Hb_000140_380--Hb_000454_090 Hb_000359_060 Hb_000359_060 Hb_004078_040--Hb_000359_060 Hb_000393_020 Hb_000393_020 Hb_004078_040--Hb_000393_020 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070 Hb_002754_010 Hb_002754_010 Hb_086639_010--Hb_002754_010 Hb_001633_210 Hb_001633_210 Hb_086639_010--Hb_001633_210 Hb_086639_010--Hb_005051_020 Hb_086639_010--Hb_000787_020 Hb_000926_090 Hb_000926_090 Hb_086639_010--Hb_000926_090 Hb_001766_080 Hb_001766_080 Hb_005051_020--Hb_001766_080 Hb_001473_160 Hb_001473_160 Hb_005051_020--Hb_001473_160 Hb_000406_140 Hb_000406_140 Hb_005051_020--Hb_000406_140 Hb_000072_120 Hb_000072_120 Hb_005051_020--Hb_000072_120 Hb_003617_020 Hb_003617_020 Hb_005051_020--Hb_003617_020 Hb_005051_020--Hb_002754_010 Hb_005074_030 Hb_005074_030 Hb_000430_020--Hb_005074_030 Hb_000538_230 Hb_000538_230 Hb_000430_020--Hb_000538_230 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000430_020--Hb_000890_150 Hb_001159_110 Hb_001159_110 Hb_000430_020--Hb_001159_110 Hb_000178_130 Hb_000178_130 Hb_000430_020--Hb_000178_130 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000890_150--Hb_000787_020 Hb_000890_150--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8409 21.2888 10.8355 23.8561 8.85982 12.1021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8242 22.3919 30.6333 9.84283 11.8737

CAGE analysis