Hb_001377_280

Information

Type -
Description -
Location Contig1377: 277426-278232
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17270g
description POPTRDRAFT_1072380; aspartyl protease family protein
nr
ID XP_011023172.1
description PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
swissprot
ID Q9LS40
description Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1
trembl
ID B9GR19
description Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0002s17270g PE=3 SV=2
Gene Ontology
ID GO:0004190
description aspartyl protease family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10418: 277207-278899 , PASA_asmbl_10419: 277750-278346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_280 0.0 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
2 Hb_000343_140 0.1247314519 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
3 Hb_033354_020 0.1700048834 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000311_040 0.1832960786 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
5 Hb_183610_010 0.1925811674 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
6 Hb_004453_070 0.1937200231 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
7 Hb_004117_120 0.1966822922 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
8 Hb_024879_010 0.1995747491 - - unknown [Glycine max]
9 Hb_001008_200 0.1997328496 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
10 Hb_012940_030 0.2032706273 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
11 Hb_024074_020 0.213997523 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
12 Hb_001195_410 0.2157944808 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
13 Hb_000074_100 0.218134289 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000311_030 0.2185097966 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
15 Hb_004032_030 0.2203040611 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
16 Hb_002660_110 0.2238878216 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
17 Hb_003567_030 0.2258014959 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
18 Hb_000245_080 0.2261867786 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
19 Hb_000521_160 0.2281777979 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000172_510 0.2300339129 - - hypothetical protein B456_007G243100 [Gossypium raimondii]

Gene co-expression network

sample Hb_001377_280 Hb_001377_280 Hb_000343_140 Hb_000343_140 Hb_001377_280--Hb_000343_140 Hb_033354_020 Hb_033354_020 Hb_001377_280--Hb_033354_020 Hb_000311_040 Hb_000311_040 Hb_001377_280--Hb_000311_040 Hb_183610_010 Hb_183610_010 Hb_001377_280--Hb_183610_010 Hb_004453_070 Hb_004453_070 Hb_001377_280--Hb_004453_070 Hb_004117_120 Hb_004117_120 Hb_001377_280--Hb_004117_120 Hb_000521_160 Hb_000521_160 Hb_000343_140--Hb_000521_160 Hb_004032_030 Hb_004032_030 Hb_000343_140--Hb_004032_030 Hb_003567_030 Hb_003567_030 Hb_000343_140--Hb_003567_030 Hb_024879_010 Hb_024879_010 Hb_000343_140--Hb_024879_010 Hb_000343_140--Hb_183610_010 Hb_000217_020 Hb_000217_020 Hb_033354_020--Hb_000217_020 Hb_111985_110 Hb_111985_110 Hb_033354_020--Hb_111985_110 Hb_003589_080 Hb_003589_080 Hb_033354_020--Hb_003589_080 Hb_001314_030 Hb_001314_030 Hb_033354_020--Hb_001314_030 Hb_000362_180 Hb_000362_180 Hb_033354_020--Hb_000362_180 Hb_001195_410 Hb_001195_410 Hb_000311_040--Hb_001195_410 Hb_034507_040 Hb_034507_040 Hb_000311_040--Hb_034507_040 Hb_000816_190 Hb_000816_190 Hb_000311_040--Hb_000816_190 Hb_000291_160 Hb_000291_160 Hb_000311_040--Hb_000291_160 Hb_011918_010 Hb_011918_010 Hb_000311_040--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_000311_040--Hb_008185_020 Hb_183610_010--Hb_004117_120 Hb_005183_170 Hb_005183_170 Hb_183610_010--Hb_005183_170 Hb_000984_310 Hb_000984_310 Hb_183610_010--Hb_000984_310 Hb_001217_040 Hb_001217_040 Hb_183610_010--Hb_001217_040 Hb_183610_010--Hb_000291_160 Hb_000482_020 Hb_000482_020 Hb_183610_010--Hb_000482_020 Hb_004453_070--Hb_001195_410 Hb_000796_020 Hb_000796_020 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_000776_060 Hb_000776_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090 Hb_004117_120--Hb_005183_170 Hb_024074_020 Hb_024074_020 Hb_004117_120--Hb_024074_020 Hb_004117_120--Hb_000984_310 Hb_004117_120--Hb_000291_160 Hb_162547_010 Hb_162547_010 Hb_004117_120--Hb_162547_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9024 15.8397 16.4539 96.8607 10.2633 10.9681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0863 16.2613 21.2716 3.09897 5.58566

CAGE analysis