Hb_001377_290

Information

Type -
Description -
Location Contig1377: 290802-293265
Sequence    

Annotation

kegg
ID rcu:RCOM_0961070
description molybdopterin cofactor synthesis protein A, putative
nr
ID XP_012083202.1
description PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
swissprot
ID Q39056
description Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial OS=Arabidopsis thaliana GN=CNX3 PE=1 SV=1
trembl
ID A0A067JWY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14252 PE=3 SV=1
Gene Ontology
ID GO:0006777
description cyclic pyranopterin monophosphate synthase accessory mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10422: 292778-292903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_290 0.0 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
2 Hb_000398_180 0.0529720307 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_011689_080 0.0598648988 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
4 Hb_003392_040 0.0603824251 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
5 Hb_001138_050 0.0606034628 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
6 Hb_004195_160 0.0611017564 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
7 Hb_002078_150 0.064471059 - - protein with unknown function [Ricinus communis]
8 Hb_028872_140 0.067861686 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
9 Hb_004324_310 0.0689146322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006332_020 0.0699335961 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
11 Hb_000613_140 0.0704190965 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
12 Hb_001301_160 0.0719470936 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
13 Hb_003058_130 0.0725290381 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
14 Hb_000923_020 0.0727371119 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
15 Hb_000720_120 0.0731623914 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
16 Hb_007426_230 0.0733708269 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
17 Hb_001584_330 0.0736406637 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
18 Hb_022216_020 0.0738214042 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_004223_280 0.0739460446 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
20 Hb_002685_140 0.074204677 - - PREDICTED: membrin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_290 Hb_001377_290 Hb_000398_180 Hb_000398_180 Hb_001377_290--Hb_000398_180 Hb_011689_080 Hb_011689_080 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_004195_160 Hb_004195_160 Hb_001377_290--Hb_004195_160 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_000398_180--Hb_004195_160 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_003392_040--Hb_003058_130 Hb_000169_010 Hb_000169_010 Hb_003392_040--Hb_000169_010 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_001138_050--Hb_000398_180 Hb_001138_050--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76317 2.66582 1.89509 2.54023 5.52731 5.74869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03448 6.32982 5.49734 2.95314 1.08323

CAGE analysis