Hb_001377_320

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1377: 303692-306277
Sequence    

Annotation

kegg
ID rcu:RCOM_0717730
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012083197.1
description PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
swissprot
ID Q9LNJ5
description Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1
trembl
ID A0A067JX67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14248 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10426: 303208-305999 , PASA_asmbl_10427: 303208-305982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_320 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
2 Hb_003813_040 0.0650075995 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
3 Hb_002022_060 0.0651794873 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
4 Hb_007904_120 0.0695042916 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_000777_050 0.075147749 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
6 Hb_000368_020 0.0761941784 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
7 Hb_000189_330 0.0779797457 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
8 Hb_000498_010 0.0781745445 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_007007_060 0.0782928645 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
10 Hb_000260_440 0.0818136243 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
11 Hb_005993_050 0.0841821128 - - Protein AFR, putative [Ricinus communis]
12 Hb_001926_030 0.0850573529 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_057878_010 0.0857449557 - - hypothetical protein VITISV_036304 [Vitis vinifera]
14 Hb_002942_050 0.0871025416 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
15 Hb_006824_060 0.0876890004 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
16 Hb_005288_150 0.0879855316 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
17 Hb_000926_310 0.0881268721 - - uncharacterized protein LOC100500241 [Glycine max]
18 Hb_004055_150 0.0881480707 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008803_090 0.0891473619 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
20 Hb_002684_040 0.0891514002 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_320 Hb_001377_320 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_002022_060 Hb_002022_060 Hb_001377_320--Hb_002022_060 Hb_007904_120 Hb_007904_120 Hb_001377_320--Hb_007904_120 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_003813_040--Hb_000189_330 Hb_007592_030 Hb_007592_030 Hb_003813_040--Hb_007592_030 Hb_002686_250 Hb_002686_250 Hb_003813_040--Hb_002686_250 Hb_002078_020 Hb_002078_020 Hb_003813_040--Hb_002078_020 Hb_003813_040--Hb_000777_050 Hb_002022_060--Hb_007904_120 Hb_007007_060 Hb_007007_060 Hb_002022_060--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_002022_060--Hb_003794_010 Hb_000009_090 Hb_000009_090 Hb_002022_060--Hb_000009_090 Hb_162286_010 Hb_162286_010 Hb_002022_060--Hb_162286_010 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_001621_170 Hb_001621_170 Hb_000189_330--Hb_001621_170 Hb_001418_040 Hb_001418_040 Hb_000189_330--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000189_330--Hb_001143_180 Hb_000395_020 Hb_000395_020 Hb_000189_330--Hb_000395_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.101 61.321 80.5502 46.1689 75.5256 95.3421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.1815 40.4692 55.3536 33.2351 45.0832

CAGE analysis