Hb_001377_360

Information

Type transcription factor
Description TF Family: ARF
Location Contig1377: 357171-361627
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09560g
description hypothetical protein
nr
ID XP_012083194.1
description PREDICTED: auxin response factor 18 [Jatropha curcas]
swissprot
ID Q9XED8
description Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1
trembl
ID A0A067K091
description Auxin response factor OS=Jatropha curcas GN=JCGZ_14244 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10432: 357124-361877 , PASA_asmbl_10433: 357917-358143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_360 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
2 Hb_007403_110 0.0801131662 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
3 Hb_004724_220 0.108127704 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
4 Hb_000291_030 0.1194817253 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
5 Hb_001477_070 0.123858925 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004635_030 0.1240520153 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
7 Hb_002228_110 0.1276072904 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
8 Hb_004324_300 0.1329940623 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
9 Hb_008695_090 0.1362360735 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
10 Hb_000059_340 0.1398089406 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
11 Hb_003682_030 0.1398779582 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
12 Hb_001123_200 0.1408737323 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000407_040 0.1439950302 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_002234_100 0.1455340601 - - F-box family protein, putative isoform 1 [Theobroma cacao]
15 Hb_000084_030 0.1458815657 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000905_210 0.1471077874 - - PREDICTED: protein gar2 [Jatropha curcas]
17 Hb_000081_010 0.1488331638 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
18 Hb_005194_020 0.1497353149 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
19 Hb_001638_030 0.1521832321 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
20 Hb_000010_240 0.1529134756 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_001377_360 Hb_001377_360 Hb_007403_110 Hb_007403_110 Hb_001377_360--Hb_007403_110 Hb_004724_220 Hb_004724_220 Hb_001377_360--Hb_004724_220 Hb_000291_030 Hb_000291_030 Hb_001377_360--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_001377_360--Hb_001477_070 Hb_004635_030 Hb_004635_030 Hb_001377_360--Hb_004635_030 Hb_002228_110 Hb_002228_110 Hb_001377_360--Hb_002228_110 Hb_007403_110--Hb_000291_030 Hb_008695_090 Hb_008695_090 Hb_007403_110--Hb_008695_090 Hb_007403_110--Hb_002228_110 Hb_000084_030 Hb_000084_030 Hb_007403_110--Hb_000084_030 Hb_007403_110--Hb_004724_220 Hb_004724_220--Hb_000291_030 Hb_005194_020 Hb_005194_020 Hb_004724_220--Hb_005194_020 Hb_004648_090 Hb_004648_090 Hb_004724_220--Hb_004648_090 Hb_000979_060 Hb_000979_060 Hb_004724_220--Hb_000979_060 Hb_004724_220--Hb_004635_030 Hb_000011_050 Hb_000011_050 Hb_000291_030--Hb_000011_050 Hb_002631_320 Hb_002631_320 Hb_000291_030--Hb_002631_320 Hb_000579_190 Hb_000579_190 Hb_000291_030--Hb_000579_190 Hb_000291_030--Hb_000979_060 Hb_000291_030--Hb_004635_030 Hb_004236_030 Hb_004236_030 Hb_000291_030--Hb_004236_030 Hb_001477_070--Hb_000084_030 Hb_001477_070--Hb_008695_090 Hb_000407_040 Hb_000407_040 Hb_001477_070--Hb_000407_040 Hb_008103_110 Hb_008103_110 Hb_001477_070--Hb_008103_110 Hb_002681_060 Hb_002681_060 Hb_001477_070--Hb_002681_060 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150 Hb_002478_040 Hb_002478_040 Hb_004635_030--Hb_002478_040 Hb_004635_030--Hb_005194_020 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_004635_030--Hb_008695_090 Hb_004635_030--Hb_001477_070 Hb_002228_110--Hb_004648_090 Hb_001898_240 Hb_001898_240 Hb_002228_110--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_006261_090 Hb_006261_090 Hb_002228_110--Hb_006261_090 Hb_001671_040 Hb_001671_040 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3441 50.2532 38.6796 13.9013 17.6878 16.137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3147 27.1669 16.0866 5.61755 3.88247

CAGE analysis