Hb_001377_380

Information

Type -
Description -
Location Contig1377: 368060-371791
Sequence    

Annotation

kegg
ID tcc:TCM_005123
description hypothetical protein
nr
ID XP_012083192.1
description PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DUG6
description Uncharacterized protein OS=Theobroma cacao GN=TCM_005123 PE=4 SV=1
Gene Ontology
ID GO:0005739
description fiber protein fb11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10436: 368028-371726 , PASA_asmbl_10437: 370260-370596
cDNA
(Sanger)
(ID:Location)		 003_I04.ab1: 368073-371705 , 007_L21.ab1: 368086-371697 , 031_H03.ab1: 368072-371696 , 041_K13.ab1: 368127-371705

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_380 0.0 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
2 Hb_000780_210 0.0552289799 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
3 Hb_000635_080 0.0585311354 - - 60S ribosomal protein L17A [Hevea brasiliensis]
4 Hb_002316_120 0.0728676123 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
5 Hb_004545_130 0.080884592 - - uncharacterized protein LOC100305465 [Glycine max]
6 Hb_000789_110 0.0854286671 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
7 Hb_000300_390 0.0892937285 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
8 Hb_012539_020 0.0934120964 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
9 Hb_004209_030 0.0952295218 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
10 Hb_000215_180 0.097468977 - - hypothetical protein 17 [Hevea brasiliensis]
11 Hb_000260_200 0.1024590499 - - -
12 Hb_183086_040 0.1025471016 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
13 Hb_000163_210 0.1030739881 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
14 Hb_000820_130 0.106849513 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
15 Hb_005663_120 0.1081635984 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
16 Hb_000270_720 0.1097980149 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_006588_080 0.1102052476 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
18 Hb_005000_180 0.1105450063 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
19 Hb_002248_100 0.1140635533 - - hypothetical protein VITISV_027197 [Vitis vinifera]
20 Hb_001434_070 0.114760628 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_380 Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_001377_380--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_001377_380--Hb_000635_080 Hb_002316_120 Hb_002316_120 Hb_001377_380--Hb_002316_120 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_000780_210--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_000635_080--Hb_004545_130 Hb_000635_080--Hb_002316_120 Hb_002316_120--Hb_000789_110 Hb_002316_120--Hb_000300_390 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_000789_110--Hb_000270_720 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_000789_110--Hb_004007_180 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.334 15.4344 55.4589 156.606 64.5784 114.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
718.67 983.151 386.833 202.406 59.4728

CAGE analysis