Hb_001377_440

Information

Type -
Description -
Location Contig1377: 403543-403894
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10445: 404394-407490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_440 0.0 - - -
2 Hb_000906_050 0.2138961859 - - -
3 Hb_053582_010 0.217174676 - - -
4 Hb_001723_050 0.2199658277 - - galactinol synthase-2 [Manihot esculenta]
5 Hb_006995_020 0.252774784 - - hypothetical protein glysoja_017339 [Glycine soja]
6 Hb_033883_050 0.269707475 - - -
7 Hb_001014_200 0.2772186411 - - -
8 Hb_174005_010 0.2789402526 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
9 Hb_018591_040 0.2953284821 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
10 Hb_007044_280 0.3045342763 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
11 Hb_001969_050 0.3076231149 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
12 Hb_011537_120 0.3115747728 - - -
13 Hb_000005_210 0.3228263667 - - -
14 Hb_000041_170 0.3228263667 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
15 Hb_000047_040 0.3228263667 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
16 Hb_000072_260 0.3228263667 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
17 Hb_000081_170 0.3228263667 - - -
18 Hb_000088_250 0.3228263667 - - -
19 Hb_000110_220 0.3228263667 - - -
20 Hb_000110_360 0.3228263667 - - -

Gene co-expression network

sample Hb_001377_440 Hb_001377_440 Hb_000906_050 Hb_000906_050 Hb_001377_440--Hb_000906_050 Hb_053582_010 Hb_053582_010 Hb_001377_440--Hb_053582_010 Hb_001723_050 Hb_001723_050 Hb_001377_440--Hb_001723_050 Hb_006995_020 Hb_006995_020 Hb_001377_440--Hb_006995_020 Hb_033883_050 Hb_033883_050 Hb_001377_440--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_001377_440--Hb_001014_200 Hb_000906_050--Hb_053582_010 Hb_000906_050--Hb_033883_050 Hb_010172_060 Hb_010172_060 Hb_000906_050--Hb_010172_060 Hb_004947_070 Hb_004947_070 Hb_000906_050--Hb_004947_070 Hb_144552_010 Hb_144552_010 Hb_000906_050--Hb_144552_010 Hb_174005_010 Hb_174005_010 Hb_053582_010--Hb_174005_010 Hb_101151_030 Hb_101151_030 Hb_053582_010--Hb_101151_030 Hb_086287_020 Hb_086287_020 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040 Hb_001969_050 Hb_001969_050 Hb_001723_050--Hb_001969_050 Hb_033222_010 Hb_033222_010 Hb_001723_050--Hb_033222_010 Hb_001723_050--Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_001723_050--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_001723_050--Hb_007044_280 Hb_006995_020--Hb_018591_040 Hb_006995_020--Hb_007044_280 Hb_007659_010 Hb_007659_010 Hb_006995_020--Hb_007659_010 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_006995_020--Hb_001969_050 Hb_110486_010 Hb_110486_010 Hb_033883_050--Hb_110486_010 Hb_033883_050--Hb_001014_200 Hb_033883_050--Hb_174005_010 Hb_011537_120 Hb_011537_120 Hb_033883_050--Hb_011537_120 Hb_033883_050--Hb_053582_010 Hb_000875_100 Hb_000875_100 Hb_001014_200--Hb_000875_100 Hb_001014_200--Hb_011537_120 Hb_121031_010 Hb_121031_010 Hb_001014_200--Hb_121031_010 Hb_034050_010 Hb_034050_010 Hb_001014_200--Hb_034050_010 Hb_001014_200--Hb_110486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 5.31332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.610639 0 0 0 0.66384

CAGE analysis