Hb_001377_480

Information

Type transcription factor
Description TF Family: MYB
Location Contig1377: 427199-428485
Sequence    

Annotation

kegg
ID tcc:TCM_005112
description Myb domain protein 7, putative
nr
ID XP_007051504.1
description Myb domain protein 7, putative [Theobroma cacao]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A061DUF4
description Myb domain protein 7, putative OS=Theobroma cacao GN=TCM_005112 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_480 0.0 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
2 Hb_187211_010 0.0743230043 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
3 Hb_111985_120 0.0834970937 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
4 Hb_000625_130 0.1012170915 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
5 Hb_001789_010 0.1069735082 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
6 Hb_001101_020 0.1073086496 - - hypothetical protein RCOM_0615680 [Ricinus communis]
7 Hb_142522_030 0.1188937323 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
8 Hb_000029_420 0.1214723173 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
9 Hb_000101_370 0.1253713117 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
10 Hb_111985_160 0.1351467108 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
11 Hb_000815_280 0.1353489487 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
12 Hb_004055_080 0.1359592731 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_111693_010 0.1383965977 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
14 Hb_116469_010 0.1385892063 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
15 Hb_000917_330 0.1448860861 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
16 Hb_000194_080 0.1460180506 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
17 Hb_028927_010 0.150151648 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_027242_010 0.1525881494 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
19 Hb_002081_220 0.1532772373 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
20 Hb_002003_030 0.1542715557 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001377_480 Hb_001377_480 Hb_187211_010 Hb_187211_010 Hb_001377_480--Hb_187211_010 Hb_111985_120 Hb_111985_120 Hb_001377_480--Hb_111985_120 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001789_010 Hb_001789_010 Hb_001377_480--Hb_001789_010 Hb_001101_020 Hb_001101_020 Hb_001377_480--Hb_001101_020 Hb_142522_030 Hb_142522_030 Hb_001377_480--Hb_142522_030 Hb_187211_010--Hb_001789_010 Hb_187211_010--Hb_001101_020 Hb_187211_010--Hb_111985_120 Hb_187211_010--Hb_000625_130 Hb_187211_010--Hb_142522_030 Hb_111985_120--Hb_001789_010 Hb_111693_010 Hb_111693_010 Hb_111985_120--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_111985_120--Hb_001101_020 Hb_000917_330 Hb_000917_330 Hb_000625_130--Hb_000917_330 Hb_001936_030 Hb_001936_030 Hb_000625_130--Hb_001936_030 Hb_000625_130--Hb_142522_030 Hb_025469_040 Hb_025469_040 Hb_000625_130--Hb_025469_040 Hb_003166_020 Hb_003166_020 Hb_000625_130--Hb_003166_020 Hb_001789_010--Hb_111693_010 Hb_001789_010--Hb_000220_170 Hb_002553_100 Hb_002553_100 Hb_001789_010--Hb_002553_100 Hb_001101_020--Hb_142522_030 Hb_001101_020--Hb_001789_010 Hb_129204_050 Hb_129204_050 Hb_001101_020--Hb_129204_050 Hb_142522_030--Hb_000917_330 Hb_131864_020 Hb_131864_020 Hb_142522_030--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_142522_030--Hb_007044_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0205137 5.91076 38.1351 12.918 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.09387 0 0.068216 86.96 0.83429

CAGE analysis