Hb_001377_490

Information

Type -
Description -
Location Contig1377: 433078-437247
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17470g
description POPTRDRAFT_1072396; hypothetical protein
nr
ID XP_012083167.1
description PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
swissprot
ID Q9XSC3
description WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1
trembl
ID A0A067JWW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14232 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transducin wd40 repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10449: 433015-434611 , PASA_asmbl_10450: 435962-437245 , PASA_asmbl_10451: 437283-438072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_490 0.0 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
2 Hb_000185_040 0.0649663146 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
3 Hb_000009_560 0.0669179171 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
4 Hb_000260_010 0.0680216027 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_000003_590 0.0685793526 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
6 Hb_164010_030 0.0688024486 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
7 Hb_000003_250 0.0697950137 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
8 Hb_022115_020 0.0702655913 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
9 Hb_002620_020 0.0707388816 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_001014_030 0.0726750714 - - ATP binding protein, putative [Ricinus communis]
11 Hb_054865_150 0.0747601685 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
12 Hb_000032_520 0.075594325 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
13 Hb_015934_040 0.0757189883 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
14 Hb_001163_100 0.0758329608 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_002450_020 0.076915808 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
16 Hb_000192_080 0.0773706079 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
17 Hb_094836_010 0.079258077 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
18 Hb_001912_110 0.0797363183 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_002809_050 0.0803349075 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
20 Hb_010964_040 0.0811946159 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]

Gene co-expression network

sample Hb_001377_490 Hb_001377_490 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_000009_560 Hb_000009_560 Hb_001377_490--Hb_000009_560 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_000192_080 Hb_000192_080 Hb_000009_560--Hb_000192_080 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_027380_220 Hb_027380_220 Hb_000260_010--Hb_027380_220 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_001912_110 Hb_001912_110 Hb_000260_010--Hb_001912_110 Hb_000260_010--Hb_164010_030 Hb_000032_520 Hb_000032_520 Hb_000003_590--Hb_000032_520 Hb_002110_190 Hb_002110_190 Hb_000003_590--Hb_002110_190 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_001377_510 Hb_001377_510 Hb_000003_590--Hb_001377_510 Hb_000487_270 Hb_000487_270 Hb_000003_590--Hb_000487_270 Hb_000497_300 Hb_000497_300 Hb_164010_030--Hb_000497_300 Hb_000116_260 Hb_000116_260 Hb_164010_030--Hb_000116_260 Hb_164010_030--Hb_001163_100 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61568 3.63148 2.44186 5.41591 3.82161 4.95565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74262 4.69171 6.46365 3.49533 3.72643

CAGE analysis