Hb_001377_500

Information

Type -
Description -
Location Contig1377: 452235-454198
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17490g
description POPTRDRAFT_755421; DOF AFFECTING GERMINATION 2 family protein
nr
ID XP_002301420.2
description DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
swissprot
ID Q43385
description Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2
trembl
ID B9GR41
description DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s17490g PE=4 SV=2
Gene Ontology
ID GO:0003677
description dof zinc finger isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10453: 452258-453137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_500 0.0 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
2 Hb_001195_500 0.1297903641 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_002035_030 0.1360899223 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
4 Hb_000000_140 0.1541047722 - - -
5 Hb_000608_020 0.154472644 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
6 Hb_002609_150 0.1630395505 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_002272_140 0.1704974038 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
8 Hb_000685_060 0.1732171486 - - ring finger protein, putative [Ricinus communis]
9 Hb_000007_160 0.1792849957 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
10 Hb_012018_010 0.1806785359 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
11 Hb_001608_030 0.1821011976 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
12 Hb_003504_040 0.1834478228 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
13 Hb_011218_050 0.1877655882 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001148_040 0.1887043299 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_002918_150 0.1895227375 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
16 Hb_001073_060 0.1913836245 - - phosphate transporter 1 [Hevea brasiliensis]
17 Hb_012702_010 0.1914896238 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
18 Hb_001791_010 0.1915100308 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
19 Hb_048653_020 0.191531565 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_003556_070 0.1917212496 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001377_500 Hb_001377_500 Hb_001195_500 Hb_001195_500 Hb_001377_500--Hb_001195_500 Hb_002035_030 Hb_002035_030 Hb_001377_500--Hb_002035_030 Hb_000000_140 Hb_000000_140 Hb_001377_500--Hb_000000_140 Hb_000608_020 Hb_000608_020 Hb_001377_500--Hb_000608_020 Hb_002609_150 Hb_002609_150 Hb_001377_500--Hb_002609_150 Hb_002272_140 Hb_002272_140 Hb_001377_500--Hb_002272_140 Hb_000007_160 Hb_000007_160 Hb_001195_500--Hb_000007_160 Hb_001355_070 Hb_001355_070 Hb_001195_500--Hb_001355_070 Hb_001791_010 Hb_001791_010 Hb_001195_500--Hb_001791_010 Hb_001148_040 Hb_001148_040 Hb_001195_500--Hb_001148_040 Hb_004631_110 Hb_004631_110 Hb_001195_500--Hb_004631_110 Hb_002035_030--Hb_001195_500 Hb_000840_070 Hb_000840_070 Hb_002035_030--Hb_000840_070 Hb_002035_030--Hb_004631_110 Hb_017857_010 Hb_017857_010 Hb_002035_030--Hb_017857_010 Hb_000853_100 Hb_000853_100 Hb_002035_030--Hb_000853_100 Hb_012702_010 Hb_012702_010 Hb_000000_140--Hb_012702_010 Hb_002248_090 Hb_002248_090 Hb_000000_140--Hb_002248_090 Hb_048653_020 Hb_048653_020 Hb_000000_140--Hb_048653_020 Hb_001373_080 Hb_001373_080 Hb_000000_140--Hb_001373_080 Hb_001608_030 Hb_001608_030 Hb_000000_140--Hb_001608_030 Hb_002660_100 Hb_002660_100 Hb_000608_020--Hb_002660_100 Hb_000429_110 Hb_000429_110 Hb_000608_020--Hb_000429_110 Hb_001558_070 Hb_001558_070 Hb_000608_020--Hb_001558_070 Hb_001259_100 Hb_001259_100 Hb_000608_020--Hb_001259_100 Hb_002928_180 Hb_002928_180 Hb_000608_020--Hb_002928_180 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_002609_150--Hb_001148_040 Hb_002609_150--Hb_000007_160 Hb_000532_130 Hb_000532_130 Hb_002609_150--Hb_000532_130 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060 Hb_002272_140--Hb_012702_010 Hb_000103_400 Hb_000103_400 Hb_002272_140--Hb_000103_400 Hb_138628_010 Hb_138628_010 Hb_002272_140--Hb_138628_010 Hb_019961_010 Hb_019961_010 Hb_002272_140--Hb_019961_010 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25622 55.9559 7.02283 16.366 1.4422 0.901663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00725 0.911033 1.82329 19.7496 0.972739

CAGE analysis