Hb_001377_510

Information

Type -
Description -
Location Contig1377: 455914-458991
Sequence    

Annotation

kegg
ID rcu:RCOM_0716170
description ormdl, putative
nr
ID XP_002523307.1
description ormdl, putative [Ricinus communis]
swissprot
ID O42901
description Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.09c PE=2 SV=3
trembl
ID B9SBD8
description Ormdl, putative OS=Ricinus communis GN=RCOM_0716170 PE=4 SV=1
Gene Ontology
ID GO:0005789
description orm1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10456: 455916-458983 , PASA_asmbl_10457: 458133-458602
cDNA
(Sanger)
(ID:Location)		 003_D06.ab1: 456138-458983 , 007_O09.ab1: 456196-458983 , 050_B20.ab1: 457688-458961

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_510 0.0 - - ormdl, putative [Ricinus communis]
2 Hb_000645_090 0.0688702934 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000003_590 0.0716164614 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
4 Hb_022115_020 0.0751025698 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
5 Hb_007416_090 0.0801246021 - - UDP-sugar transporter, putative [Ricinus communis]
6 Hb_002110_190 0.0807274863 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
7 Hb_007638_030 0.0826135021 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
8 Hb_001377_490 0.0879703499 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
9 Hb_002481_080 0.0882414506 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_000181_400 0.0918072754 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
11 Hb_000245_040 0.0919813219 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
12 Hb_155159_020 0.0925381484 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
13 Hb_010964_040 0.0939895607 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
14 Hb_000260_010 0.0953670144 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
15 Hb_000192_080 0.0956444545 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
16 Hb_000890_210 0.0958869666 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
17 Hb_000890_150 0.0975364346 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
18 Hb_004324_130 0.0982885167 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_002078_130 0.0985697727 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_001014_030 0.0988000723 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001377_510 Hb_001377_510 Hb_000645_090 Hb_000645_090 Hb_001377_510--Hb_000645_090 Hb_000003_590 Hb_000003_590 Hb_001377_510--Hb_000003_590 Hb_022115_020 Hb_022115_020 Hb_001377_510--Hb_022115_020 Hb_007416_090 Hb_007416_090 Hb_001377_510--Hb_007416_090 Hb_002110_190 Hb_002110_190 Hb_001377_510--Hb_002110_190 Hb_007638_030 Hb_007638_030 Hb_001377_510--Hb_007638_030 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_000032_520 Hb_000032_520 Hb_000003_590--Hb_000032_520 Hb_000003_590--Hb_002110_190 Hb_001377_490 Hb_001377_490 Hb_000003_590--Hb_001377_490 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_000487_270 Hb_000487_270 Hb_000003_590--Hb_000487_270 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_022115_020--Hb_155159_020 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150 Hb_000069_210 Hb_000069_210 Hb_007416_090--Hb_000069_210 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_001789_150 Hb_001789_150 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_000140_280 Hb_000140_280 Hb_007638_030--Hb_000140_280 Hb_000429_150 Hb_000429_150 Hb_007638_030--Hb_000429_150 Hb_007638_030--Hb_004567_090 Hb_007638_030--Hb_002110_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8246 33.3434 15.0034 52.1524 32.3242 32.0745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8117 34.2772 46.6964 44.0917 27.8594

CAGE analysis