Hb_001379_060

Information

Type -
Description -
Location Contig1379: 25631-33614
Sequence    

Annotation

kegg
ID rcu:RCOM_1383270
description hypothetical protein
nr
ID XP_012093163.1
description PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
swissprot
ID P37995
description Ribosomal RNA small subunit methyltransferase E OS=Dickeya dadantii (strain 3937) GN=rsmE PE=3 SV=2
trembl
ID A0A067LBD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16376 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferases isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10466: 29641-30965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_060 0.0 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
2 Hb_001828_090 0.0671629203 - - prohibitin, putative [Ricinus communis]
3 Hb_007101_150 0.0764359808 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
4 Hb_002205_080 0.0765610673 - - 40S ribosomal protein S26, putative [Ricinus communis]
5 Hb_001512_070 0.0781480598 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
6 Hb_000684_090 0.086279037 transcription factor TF Family: S1Fa-like -
7 Hb_000270_270 0.0908601916 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
8 Hb_000015_080 0.0915804311 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
9 Hb_012340_080 0.091648926 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_007154_020 0.0926747524 - - -
11 Hb_000221_220 0.0960413025 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
12 Hb_001776_090 0.0969941777 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
13 Hb_002928_130 0.0973467409 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
14 Hb_001257_080 0.0980938893 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011360_140 0.0990962175 - - 40S ribosomal protein S19, putative [Ricinus communis]
16 Hb_003018_200 0.0996187709 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
17 Hb_000473_040 0.0998172531 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
18 Hb_021443_070 0.1010619733 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
19 Hb_000302_010 0.1010879568 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_012762_050 0.1025957798 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]

Gene co-expression network

sample Hb_001379_060 Hb_001379_060 Hb_001828_090 Hb_001828_090 Hb_001379_060--Hb_001828_090 Hb_007101_150 Hb_007101_150 Hb_001379_060--Hb_007101_150 Hb_002205_080 Hb_002205_080 Hb_001379_060--Hb_002205_080 Hb_001512_070 Hb_001512_070 Hb_001379_060--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001379_060--Hb_000684_090 Hb_000270_270 Hb_000270_270 Hb_001379_060--Hb_000270_270 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001828_090--Hb_001512_070 Hb_001828_090--Hb_000684_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_002205_080--Hb_001257_080 Hb_002205_080--Hb_000270_270 Hb_002205_080--Hb_007101_150 Hb_002205_080--Hb_001828_090 Hb_002205_080--Hb_003018_200 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_001512_070--Hb_000684_090 Hb_000684_090--Hb_000270_270 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_000684_090--Hb_011360_140 Hb_153112_020 Hb_153112_020 Hb_000270_270--Hb_153112_020 Hb_002874_190 Hb_002874_190 Hb_000270_270--Hb_002874_190 Hb_004931_090 Hb_004931_090 Hb_000270_270--Hb_004931_090 Hb_000331_080 Hb_000331_080 Hb_000270_270--Hb_000331_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61173 2.89142 4.37497 1.9414 9.53222 5.3443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94276 11.7767 6.82337 2.6471 0.905765

CAGE analysis