Hb_001380_020

Information

Type -
Description -
Location Contig1380: 71578-72249
Sequence    

Annotation

kegg
ID rcu:RCOM_1217310
description 3-isopropylmalate dehydratase, putative (EC:4.2.1.33)
nr
ID XP_002528344.1
description 3-isopropylmalate dehydratase, putative [Ricinus communis]
swissprot
ID Q94AR8
description 3-isopropylmalate dehydratase large subunit OS=Arabidopsis thaliana GN=IIL1 PE=1 SV=1
trembl
ID B9SQS5
description 3-isopropylmalate dehydratase, putative OS=Ricinus communis GN=RCOM_1217310 PE=4 SV=1
Gene Ontology
ID GO:0009570
description 3-isopropylmalate dehydratase large subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001380_020 0.0 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
2 Hb_001158_220 0.0817262278 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
3 Hb_156825_010 0.0845627062 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
4 Hb_070739_010 0.0947892612 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
5 Hb_007086_010 0.1003813063 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
6 Hb_002495_040 0.105742989 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
7 Hb_007594_130 0.1061066557 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
8 Hb_017259_010 0.1078244229 - - -
9 Hb_003688_130 0.1107671472 - - phosphoserine phosphatase, putative [Ricinus communis]
10 Hb_002475_160 0.1111950867 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
11 Hb_000261_110 0.1113814544 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
12 Hb_004881_020 0.1116104319 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
13 Hb_005016_170 0.1118450428 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000092_100 0.1119863528 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
15 Hb_005565_040 0.1125890973 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003641_060 0.1137235458 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
17 Hb_007643_050 0.114912756 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000364_080 0.1161752637 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
19 Hb_000086_380 0.1172482664 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
20 Hb_005288_190 0.1182125964 - - PREDICTED: exportin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_001380_020 Hb_001380_020 Hb_001158_220 Hb_001158_220 Hb_001380_020--Hb_001158_220 Hb_156825_010 Hb_156825_010 Hb_001380_020--Hb_156825_010 Hb_070739_010 Hb_070739_010 Hb_001380_020--Hb_070739_010 Hb_007086_010 Hb_007086_010 Hb_001380_020--Hb_007086_010 Hb_002495_040 Hb_002495_040 Hb_001380_020--Hb_002495_040 Hb_007594_130 Hb_007594_130 Hb_001380_020--Hb_007594_130 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_002475_160 Hb_002475_160 Hb_001158_220--Hb_002475_160 Hb_007643_050 Hb_007643_050 Hb_001158_220--Hb_007643_050 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_156825_010--Hb_007086_010 Hb_011671_090 Hb_011671_090 Hb_156825_010--Hb_011671_090 Hb_003688_130 Hb_003688_130 Hb_156825_010--Hb_003688_130 Hb_030131_040 Hb_030131_040 Hb_156825_010--Hb_030131_040 Hb_001123_030 Hb_001123_030 Hb_156825_010--Hb_001123_030 Hb_000462_140 Hb_000462_140 Hb_070739_010--Hb_000462_140 Hb_000808_040 Hb_000808_040 Hb_070739_010--Hb_000808_040 Hb_086639_070 Hb_086639_070 Hb_070739_010--Hb_086639_070 Hb_007919_060 Hb_007919_060 Hb_070739_010--Hb_007919_060 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_030385_010 Hb_030385_010 Hb_007086_010--Hb_030385_010 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_004881_020 Hb_004881_020 Hb_007594_130--Hb_004881_020 Hb_003952_070 Hb_003952_070 Hb_007594_130--Hb_003952_070 Hb_002671_100 Hb_002671_100 Hb_007594_130--Hb_002671_100 Hb_000212_240 Hb_000212_240 Hb_007594_130--Hb_000212_240 Hb_007594_130--Hb_003030_070 Hb_040262_010 Hb_040262_010 Hb_007594_130--Hb_040262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.503 130.599 107.932 144.846 196.04 308.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
273.153 174.142 34.6307 94.0305 69.952

CAGE analysis