Hb_001381_050

Information

Type desease resistance
Description Gene Name: TIR
Location Contig1381: 63839-68242
Sequence    

Annotation

kegg
ID rcu:RCOM_0009540
description leucine-rich repeat-containing protein, putative
nr
ID XP_012075301.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KSR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09469 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10506: 63815-68416
cDNA
(Sanger)
(ID:Location)		 004_F19.ab1: 63818-64852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001381_050 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_007994_010 0.0650914893 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
3 Hb_001085_290 0.0800490974 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
4 Hb_005402_040 0.0806373169 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
5 Hb_000066_150 0.0813581185 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_000088_050 0.082170847 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
7 Hb_001341_180 0.082315598 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
8 Hb_000003_100 0.0828550634 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
9 Hb_003216_090 0.0831183338 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
10 Hb_006031_010 0.0837489035 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
11 Hb_004064_050 0.0838448994 - - Structural maintenance of chromosome, putative [Ricinus communis]
12 Hb_011202_020 0.0842514318 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_012055_110 0.0845972419 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
14 Hb_003280_020 0.0847602224 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
15 Hb_001935_160 0.0856649651 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
16 Hb_002007_110 0.0862788474 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
17 Hb_001377_350 0.086393382 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_001431_120 0.0877242363 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
19 Hb_041327_010 0.0887298794 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
20 Hb_004048_120 0.0888034166 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001381_050 Hb_001381_050 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_000088_050 Hb_000088_050 Hb_001381_050--Hb_000088_050 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_001085_290--Hb_000088_050 Hb_000017_230 Hb_000017_230 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_000088_050--Hb_085742_010 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_092000_010 Hb_092000_010 Hb_000088_050--Hb_092000_010 Hb_004048_120 Hb_004048_120 Hb_001341_180--Hb_004048_120 Hb_001341_180--Hb_027472_220 Hb_003280_020 Hb_003280_020 Hb_001341_180--Hb_003280_020 Hb_001341_180--Hb_005402_040 Hb_002639_080 Hb_002639_080 Hb_001341_180--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_001341_180--Hb_000261_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73077 2.96606 2.30059 2.49646 2.01935 3.30078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00574 0.705645 1.57282 3.65401 3.57059

CAGE analysis