Hb_001385_050

Information

Type -
Description -
Location Contig1385: 28692-31259
Sequence    

Annotation

kegg
ID rcu:RCOM_1720980
description catalytic, putative
nr
ID XP_002521107.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q8BZW8
description NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
trembl
ID B9S538
description Catalytic, putative OS=Ricinus communis GN=RCOM_1720980 PE=4 SV=1
Gene Ontology
ID GO:0006346
description nhl domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10550: 30399-44191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_050 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001125_020 0.0924957822 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
3 Hb_001206_070 0.1034824408 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_022593_060 0.1092053655 - - -
5 Hb_010024_010 0.1135220364 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000116_080 0.1407864383 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
7 Hb_001241_060 0.1573582727 - - -
8 Hb_000962_010 0.1664387967 - - -
9 Hb_001762_070 0.1718737861 - - -
10 Hb_004429_040 0.1938848445 - - -
11 Hb_000005_210 0.1994599584 - - -
12 Hb_000041_170 0.1994599584 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
13 Hb_000047_040 0.1994599584 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
14 Hb_000072_260 0.1994599584 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
15 Hb_000081_170 0.1994599584 - - -
16 Hb_000088_250 0.1994599584 - - -
17 Hb_000110_220 0.1994599584 - - -
18 Hb_000110_360 0.1994599584 - - -
19 Hb_000111_510 0.1994599584 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000122_170 0.1994599584 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001385_050 Hb_001385_050 Hb_001125_020 Hb_001125_020 Hb_001385_050--Hb_001125_020 Hb_001206_070 Hb_001206_070 Hb_001385_050--Hb_001206_070 Hb_022593_060 Hb_022593_060 Hb_001385_050--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001385_050--Hb_010024_010 Hb_000116_080 Hb_000116_080 Hb_001385_050--Hb_000116_080 Hb_001241_060 Hb_001241_060 Hb_001385_050--Hb_001241_060 Hb_001125_020--Hb_000116_080 Hb_000696_320 Hb_000696_320 Hb_001125_020--Hb_000696_320 Hb_001125_020--Hb_001206_070 Hb_000833_080 Hb_000833_080 Hb_001125_020--Hb_000833_080 Hb_000005_210 Hb_000005_210 Hb_001125_020--Hb_000005_210 Hb_001206_070--Hb_022593_060 Hb_001206_070--Hb_010024_010 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001241_060 Hb_022593_060--Hb_010024_010 Hb_022593_060--Hb_001241_060 Hb_022593_060--Hb_000116_080 Hb_004429_040 Hb_004429_040 Hb_022593_060--Hb_004429_040 Hb_010024_010--Hb_001241_060 Hb_010024_010--Hb_004429_040 Hb_010024_010--Hb_000116_080 Hb_000116_080--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_000116_080--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_000116_080--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_000116_080--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_000116_080--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000116_080--Hb_000088_250 Hb_001241_060--Hb_004429_040 Hb_002490_040 Hb_002490_040 Hb_001241_060--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_001241_060--Hb_000563_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165792 0.0627758 0 0 0 2.72738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis