Hb_001385_070

Information

Type -
Description -
Location Contig1385: 35307-43893
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID CAN71748.1
description hypothetical protein VITISV_019194 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AWD0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019194 PE=4 SV=1
Gene Ontology
ID GO:0003824
description integrase core domain containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_070 0.0 - - hypothetical protein VITISV_019194 [Vitis vinifera]
2 Hb_127552_050 0.0860028451 - - hypothetical protein VITISV_030752 [Vitis vinifera]
3 Hb_000123_340 0.094925595 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
4 Hb_011649_030 0.1021592844 - - hypothetical protein [Vitis hybrid cultivar]
5 Hb_001793_040 0.1141512775 - - hypothetical protein VITISV_006810 [Vitis vinifera]
6 Hb_000574_330 0.1231592581 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_004520_010 0.1233451122 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_000820_100 0.1236829064 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_007543_020 0.1239139919 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
10 Hb_000352_060 0.1398586778 - - RNA-directed DNA polymerase [Arachis hypogaea]
11 Hb_041813_040 0.1430472885 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
12 Hb_000173_110 0.1431999317 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
13 Hb_102602_020 0.1450371221 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
14 Hb_001383_080 0.1452585643 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
15 Hb_003687_160 0.1486918444 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_001366_260 0.149112854 - - T4.15 [Malus x robusta]
17 Hb_035651_010 0.1506800612 - - receptor-kinase, putative [Ricinus communis]
18 Hb_006405_040 0.1517052004 - - hypothetical protein VITISV_026680 [Vitis vinifera]
19 Hb_002013_030 0.1568497878 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
20 Hb_003414_040 0.1582833836 - - hypothetical protein VITISV_016691 [Vitis vinifera]

Gene co-expression network

sample Hb_001385_070 Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_011649_030 Hb_011649_030 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_127552_050--Hb_011649_030 Hb_127552_050--Hb_000123_340 Hb_127552_050--Hb_000574_330 Hb_041813_040 Hb_041813_040 Hb_127552_050--Hb_041813_040 Hb_127552_050--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000123_340--Hb_000173_110 Hb_000820_100 Hb_000820_100 Hb_000123_340--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_000352_060 Hb_000352_060 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_003414_040 Hb_003414_040 Hb_001793_040--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_001793_040--Hb_005678_030 Hb_001793_040--Hb_011649_030 Hb_001793_040--Hb_127552_050 Hb_020831_070 Hb_020831_070 Hb_001793_040--Hb_020831_070 Hb_000574_330--Hb_041813_040 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_004520_010--Hb_000820_100 Hb_035651_010 Hb_035651_010 Hb_004520_010--Hb_035651_010 Hb_005920_030 Hb_005920_030 Hb_004520_010--Hb_005920_030 Hb_004520_010--Hb_000123_340 Hb_004520_010--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0162406 0.487137 0.302121 0.227365 0.0938054 0.0900243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00919333 0.0289402 0.0278408 0.529809 3.32443

CAGE analysis