Hb_001386_010

Information

Type -
Description -
Location Contig1386: 51537-52089
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33660g
description POPTRDRAFT_641826; hypothetical protein
nr
ID XP_012070220.1
description PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_A24.ab1: 51649-52191

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_010 0.0 - - PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
2 Hb_148131_010 0.1657981456 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
3 Hb_165402_010 0.1713018213 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
4 Hb_010003_010 0.1713311466 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
5 Hb_051257_010 0.176964386 - - -
6 Hb_000230_180 0.1881057736 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
7 Hb_002370_030 0.1891359178 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
8 Hb_000077_290 0.1922965515 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002122_010 0.195114808 - - -
10 Hb_005170_010 0.1959809799 - - -
11 Hb_031931_020 0.1960424112 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
12 Hb_062558_010 0.1967137668 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
13 Hb_012353_040 0.1995372823 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_010655_020 0.2004586566 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
15 Hb_133230_010 0.2014472662 - - hypothetical protein L484_001846 [Morus notabilis]
16 Hb_004602_020 0.2016554984 transcription factor TF Family: SET PREDICTED: N-lysine methyltransferase setd6 isoform X2 [Jatropha curcas]
17 Hb_003471_020 0.2027846067 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
18 Hb_102591_010 0.2028605363 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
19 Hb_002611_020 0.2039870401 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
20 Hb_005062_110 0.2056915327 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001386_010 Hb_001386_010 Hb_148131_010 Hb_148131_010 Hb_001386_010--Hb_148131_010 Hb_165402_010 Hb_165402_010 Hb_001386_010--Hb_165402_010 Hb_010003_010 Hb_010003_010 Hb_001386_010--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_001386_010--Hb_051257_010 Hb_000230_180 Hb_000230_180 Hb_001386_010--Hb_000230_180 Hb_002370_030 Hb_002370_030 Hb_001386_010--Hb_002370_030 Hb_003471_020 Hb_003471_020 Hb_148131_010--Hb_003471_020 Hb_148131_010--Hb_002370_030 Hb_004040_040 Hb_004040_040 Hb_148131_010--Hb_004040_040 Hb_062558_010 Hb_062558_010 Hb_148131_010--Hb_062558_010 Hb_181441_010 Hb_181441_010 Hb_148131_010--Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_165402_010--Hb_000230_180 Hb_077573_010 Hb_077573_010 Hb_165402_010--Hb_077573_010 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_000889_100 Hb_000889_100 Hb_010003_010--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_010003_010--Hb_000094_290 Hb_000077_290 Hb_000077_290 Hb_010003_010--Hb_000077_290 Hb_010003_010--Hb_000230_180 Hb_010003_010--Hb_051257_010 Hb_005170_010 Hb_005170_010 Hb_010003_010--Hb_005170_010 Hb_164010_050 Hb_164010_050 Hb_051257_010--Hb_164010_050 Hb_051257_010--Hb_000889_100 Hb_000684_260 Hb_000684_260 Hb_051257_010--Hb_000684_260 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_051257_010--Hb_000094_290 Hb_000230_180--Hb_002611_020 Hb_000230_180--Hb_005170_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_002370_030--Hb_004040_040 Hb_150346_010 Hb_150346_010 Hb_002370_030--Hb_150346_010 Hb_002370_030--Hb_062558_010 Hb_027136_010 Hb_027136_010 Hb_002370_030--Hb_027136_010 Hb_000260_780 Hb_000260_780 Hb_002370_030--Hb_000260_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759597 4.0387 8.85221 18.5046 7.1767 10.984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285946 1.12406 1.34974 6.77806 5.15759

CAGE analysis