Hb_001386_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1386: 89560-92221
Sequence    

Annotation

kegg
ID vvi:100249687
description zinc finger protein 511
nr
ID XP_012070284.1
description PREDICTED: zinc finger protein 511 [Jatropha curcas]
swissprot
ID Q7ZZ00
description Zinc finger protein 511 OS=Danio rerio GN=znf511 PE=2 SV=1
trembl
ID A0A067LCT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10111 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 511

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10578: 89583-92214
cDNA
(Sanger)
(ID:Location)		 044_G15.ab1: 89583-91948

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_040 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
2 Hb_031862_100 0.057725327 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000948_160 0.0602456454 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
4 Hb_002183_060 0.0662156499 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
5 Hb_007928_030 0.0673865345 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
6 Hb_000465_390 0.067790806 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
7 Hb_000053_020 0.0726860192 - - F-box and wd40 domain protein, putative [Ricinus communis]
8 Hb_001189_070 0.0730047395 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
9 Hb_000431_170 0.0739648064 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
10 Hb_001314_050 0.0793740097 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
11 Hb_007676_080 0.0807835266 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
12 Hb_024650_070 0.0808481861 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
13 Hb_006907_130 0.081403199 - - unnamed protein product [Coffea canephora]
14 Hb_005914_170 0.0833564545 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
15 Hb_015934_070 0.083388861 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
16 Hb_000081_160 0.0835938309 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
17 Hb_004767_080 0.0841987227 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
18 Hb_189216_020 0.0843495856 - - PREDICTED: translin [Jatropha curcas]
19 Hb_003678_020 0.0862171254 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002197_050 0.0865090047 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]

Gene co-expression network

sample Hb_001386_040 Hb_001386_040 Hb_031862_100 Hb_031862_100 Hb_001386_040--Hb_031862_100 Hb_000948_160 Hb_000948_160 Hb_001386_040--Hb_000948_160 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_000421_220 Hb_000421_220 Hb_002183_060--Hb_000421_220 Hb_008453_030 Hb_008453_030 Hb_002183_060--Hb_008453_030 Hb_002183_060--Hb_015934_070 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_007928_030--Hb_000431_170 Hb_007928_030--Hb_005914_170 Hb_006693_020 Hb_006693_020 Hb_000465_390--Hb_006693_020 Hb_000465_390--Hb_000431_170 Hb_001863_430 Hb_001863_430 Hb_000465_390--Hb_001863_430 Hb_000529_030 Hb_000529_030 Hb_000465_390--Hb_000529_030 Hb_000465_390--Hb_000948_160 Hb_003768_030 Hb_003768_030 Hb_000053_020--Hb_003768_030 Hb_000053_020--Hb_008453_030 Hb_006274_030 Hb_006274_030 Hb_000053_020--Hb_006274_030 Hb_000053_020--Hb_001189_070 Hb_001489_090 Hb_001489_090 Hb_000053_020--Hb_001489_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.13541 2.71896 4.96451 6.25411 4.50046 6.22631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48852 12.3213 5.42387 8.54461 6.31611

CAGE analysis