Hb_001386_050

Information

Type -
Description -
Location Contig1386: 93639-96679
Sequence    

Annotation

kegg
ID tcc:TCM_017227
description SecE/sec61-gamma protein transport protein
nr
ID XP_012070294.1
description PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
swissprot
ID P38385
description Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1
trembl
ID D6BQN8
description Protein transport protein SEC61 subunit gamma OS=Jatropha curcas GN=JCGZ_26443 PE=2 SV=1
Gene Ontology
ID GO:0005886
description protein transport protein sec61 subunit gamma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10580: 93742-96516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_050 0.0 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
2 Hb_008948_050 0.0793269299 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
3 Hb_000878_020 0.0803863796 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
4 Hb_002344_070 0.0916556227 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
5 Hb_000853_240 0.0942958481 - - -
6 Hb_006588_080 0.0963992777 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
7 Hb_000805_130 0.0989764221 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_390 0.0992827621 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_004735_050 0.103138165 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_002918_140 0.1049635235 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
11 Hb_017862_010 0.1052392963 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
12 Hb_146225_010 0.1064957079 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
13 Hb_004007_180 0.1065053169 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_000062_390 0.1077969346 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
15 Hb_000696_220 0.1082609244 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
16 Hb_000172_420 0.1088296152 - - 60S ribosomal protein L30, putative [Ricinus communis]
17 Hb_000110_170 0.1098755954 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000635_080 0.1107373023 - - 60S ribosomal protein L17A [Hevea brasiliensis]
19 Hb_002105_030 0.1117882068 - - -
20 Hb_003326_020 0.11215555 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_001386_050 Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_002588_010 Hb_002588_010 Hb_008948_050--Hb_002588_010 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_019516_100 Hb_019516_100 Hb_008948_050--Hb_019516_100 Hb_000878_020--Hb_006588_080 Hb_000110_170 Hb_000110_170 Hb_000878_020--Hb_000110_170 Hb_000878_020--Hb_008948_050 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_000258_280 Hb_000258_280 Hb_002344_070--Hb_000258_280 Hb_002344_070--Hb_008948_050 Hb_007497_030 Hb_007497_030 Hb_002344_070--Hb_007497_030 Hb_012053_010 Hb_012053_010 Hb_002344_070--Hb_012053_010 Hb_000696_220 Hb_000696_220 Hb_000853_240--Hb_000696_220 Hb_003198_010 Hb_003198_010 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000963_030 Hb_000963_030 Hb_000853_240--Hb_000963_030 Hb_000853_240--Hb_000805_130 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_006588_080--Hb_000172_420 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_000805_130--Hb_001634_040 Hb_000805_130--Hb_000172_420 Hb_000062_390 Hb_000062_390 Hb_000805_130--Hb_000062_390 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.0576 10.3585 17.5994 27.96 23.0817 27.2888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.409 279.281 98.4872 27.9711 20.4933

CAGE analysis